| Field | Description |
|---|---|
| SampleID | Name of the sample |
| TrimReads | Total number of reads after quality filtering |
| MeanReadLen | Average read length after quality filtering |
| Contigs | Number of contigs of the draft genome (>200bp) |
| GenomeLength | Length (bp) of the draft genome |
| LargestContig | Length (bp) of the largest contig in the genome |
| N50 | Length of the smallest contig in the set that contains the fewest (largest) contigs whose combined length represents at least 50% of the assembly |
| GC-Content | GC content (%) of the draft genome |
| Depth | Number of times each nucleotide position in the draft genome has a read that aligns to that position |
| SampleID | TrimReads | MeanReadLen | Contigs | GenomeLength | LargestContig | N50 | GC-Content | Depth |
|---|---|---|---|---|---|---|---|---|
| ID014CT | 546057 | 134 | 661 | 5309227 | 90580 | 17813 | 57.21 | 13X |
| ID025 | 492464 | 131 | 1299 | 3803527 | 74957 | 3998 | 54.14 | 16X |
| ID037 | 341830 | 135 | 735 | 5303150 | 89360 | 15139 | 56.70 | 8X |
| ID06CT | 581718 | 134 | 583 | 5294842 | 168845 | 18875 | 56.64 | 14X |
| ID08CT | 405298 | 135 | 435 | 5544024 | 237668 | 29102 | 56.90 | 9X |
| ID125 | 370827 | 134 | 555 | 5500018 | 134700 | 21151 | 56.36 | 9X |
| ID135 | 369111 | 134 | 351 | 5554277 | 169832 | 32960 | 56.74 | 8X |
| ID149 | 484315 | 133 | 196 | 4794798 | 156387 | 60435 | 56.10 | 13X |
| ID152 | 331509 | 135 | 215 | 4818218 | 164294 | 52213 | 55.97 | 9X |
| ID163I | 364263 | 132 | 3164 | 10230147 | 46076 | 5725 | 53.82 | 4X |
| ID187CT | 256799 | 136 | 598 | 5138613 | 95472 | 18311 | 57.07 | 6X |
| ID188 | 495872 | 131 | 389 | 5322876 | 156359 | 31212 | 56.94 | 12X |
| ID198 | 462816 | 129 | 671 | 5345362 | 120013 | 17862 | 56.68 | 11X |
| ID260 | 447579 | 129 | 538 | 5379369 | 91680 | 21586 | 57.33 | 10X |
| ORTHO042EI | 367539 | 133 | 310 | 4763582 | 131655 | 35130 | 56.01 | 10X |
| ORTHO053E | 328663 | 136 | 513 | 5258666 | 83152 | 21191 | 57.30 | 8X |
| ORTHO066E | 543399 | 132 | 1429 | 9788292 | 100684 | 13636 | 56.56 | 7X |
| ORTHO067E | 533801 | 132 | 693 | 5188303 | 105830 | 15133 | 56.60 | 13X |
| ORTHO08HWII | 44345 | 130 | 1008 | 5564112 | 69234 | 10907 | 56.35 | 1X |
Average number of reads per sample = 408853
Average read length per sample = 133 bp
Average number of contigs per sample = 755
Average genome length per sample = 5679021 bp
Average largest contig length per sample = 120357 bp
Average N50 per sample = 23283 bp
Average GC content per sample = 56.391%
Average sequencing depth = 9.526X
| Field | Description |
|---|---|
| GenomePosition | Position in the genome where SNP is found |
| Type | Nature of the SNP identified (Only ‘True’ SNPs are shown by default) |
| ReferenceAllele | Allele found in the reference genome |
| AlternateAllele | Allele found in the genome of interest forming the SNP |
| Consequence | Amino acid alterations caused by the SNP |
| AffectedGene | The tartget gene affected by the SNP |
| Product | The outcome from the presence of the SNP |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146714 | snp | G | A | missense_variant c.925G>A p.Asp309Asn | acriflavine resistance protein E | |
| 146742 | snp | C | A | missense_variant c.953C>A p.Ala318Asp | acriflavine resistance protein E | |
| 146754 | snp | A | C | missense_variant c.965A>C p.Glu322Ala | acriflavine resistance protein E | |
| 146899 | snp | C | A | missense_variant c.1110C>A p.Asn370Lys | acriflavine resistance protein E | |
| 188602 | snp | G | A | missense_variant c.208G>A p.Val70Ile | emrD | multidrug resistance protein D |
| 189280 | snp | A | G | missense_variant c.886A>G p.Ile296Val | emrD | multidrug resistance protein D |
| 189473 | snp | C | A | missense_variant c.1079C>A p.Thr360Asn | emrD | multidrug resistance protein D |
| 338901 | snp | G | A | missense_variant c.46G>A p.Ala16Thr | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339086 | snp | G | T | missense_variant c.231G>T p.Glu77Asp | 6-N-hydroxylaminopurine resistance protein | |
| 339237 | snp | G | T | missense_variant c.382G>T p.Ala128Ser | 6-N-hydroxylaminopurine resistance protein | |
| 339359 | snp | T | G | missense_variant c.504T>G p.Asp168Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339395 | snp | G | T | missense_variant c.540G>T p.Gln180His | 6-N-hydroxylaminopurine resistance protein | |
| 442554 | snp | C | T | missense_variant c.397G>A p.Val133Met | chloramphenical resistance permease RarD | |
| 513223 | snp | G | C | missense_variant c.407C>G p.Ala136Gly | zraP | zinc resistance protein |
| 513290 | snp | T | G | missense_variant c.340A>C p.Ile114Leu | zraP | zinc resistance protein |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513522 | snp | C | G | missense_variant c.108G>C p.Met36Ile | zraP | zinc resistance protein |
| 513563 | snp | C | T | missense_variant c.67G>A p.Ala23Thr | zraP | zinc resistance protein |
| 513571 | snp | G | C | missense_variant c.59C>G p.Ala20Gly | zraP | zinc resistance protein |
| 884590 | snp | C | T | missense_variant c.839G>A p.Gly280Asp | copper resistance protein | |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | copper resistance protein | |
| 884975 | snp | T | G | missense_variant c.454A>C p.Lys152Gln | copper resistance protein | |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418452 | snp | C | T | missense_variant c.406G>A p.Ala136Thr | oxidative-stress-resistance chaperone | |
| 1418602 | snp | T | G | missense_variant c.256A>C p.Thr86Pro | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1508432 | snp | T | A | missense_variant c.781A>T p.Thr261Ser | Fosmidomycin resistance protein | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1509185 | snp | A | C | missense_variant c.28T>G p.Leu10Val | Fosmidomycin resistance protein | |
| 2482166 | snp | A | G | missense_variant c.41A>G p.Asn14Ser | quinolone resistance protein | |
| 2482402 | snp | G | A | missense_variant c.277G>A p.Val93Ile | quinolone resistance protein | |
| 2482835 | snp | C | G | missense_variant c.710C>G p.Thr237Ser | quinolone resistance protein | |
| 2483199 | snp | A | T | missense_variant c.1074A>T p.Glu358Asp | quinolone resistance protein | |
| 2483456 | snp | T | C | missense_variant c.1331T>C p.Val444Ala | quinolone resistance protein | |
| 3032783 | snp | G | A | missense_variant c.8G>A p.Ser3Asn | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 3048036 | snp | A | T | missense_variant c.1252T>A p.Ser418Thr | methyl viologen resistance protein SmvA | |
| 3048391 | snp | T | C | missense_variant c.897A>G p.Ile299Met | methyl viologen resistance protein SmvA | |
| 3048600 | snp | G | T | missense_variant c.688C>A p.Leu230Ile | methyl viologen resistance protein SmvA | |
| 3048690 | snp | C | T | missense_variant c.598G>A p.Val200Ile | methyl viologen resistance protein SmvA | |
| 3048718 | snp | T | G | missense_variant c.570A>C p.Glu190Asp | methyl viologen resistance protein SmvA | |
| 3049041 | snp | T | C | missense_variant c.247A>G p.Ile83Val | methyl viologen resistance protein SmvA | |
| 3117314 | snp | G | C | missense_variant c.353C>G p.Ala118Gly | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3117483 | snp | G | C | missense_variant c.184C>G p.Pro62Ala | tellurite resistance protein TehB | |
| 3117507 | snp | C | T | missense_variant c.160G>A p.Ala54Thr | tellurite resistance protein TehB | |
| 3117636 | snp | G | C | missense_variant c.31C>G p.Gln11Glu | tellurite resistance protein TehB | |
| 3161233 | snp | G | A | missense_variant c.1303G>A p.Val435Ile | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921433 | snp | T | C | missense_variant c.745A>G p.Thr249Ala | multidrug resistance outer membrane protein MdtQ | |
| 3961497 | snp | T | A | missense_variant c.40T>A p.Leu14Ile | phage resistance protein | |
| 3961797 | snp | A | G | missense_variant c.340A>G p.Asn114Asp | phage resistance protein | |
| 3961810 | snp | G | C | missense_variant c.353G>C p.Ser118Thr | phage resistance protein | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 3962100 | snp | G | A | missense_variant c.643G>A p.Ala215Thr | phage resistance protein | |
| 3962292 | snp | A | G | missense_variant c.835A>G p.Ile279Val | phage resistance protein | |
| 3962466 | snp | A | C | missense_variant c.1009A>C p.Ser337Arg | phage resistance protein | |
| 4441278 | snp | C | G | missense_variant c.38C>G p.Thr13Ser | acriflavin resistance protein AcrA | |
| 4442311 | snp | T | G | missense_variant c.1071T>G p.Asn357Lys | acriflavin resistance protein AcrA | |
| 4442366 | snp | C | G | missense_variant c.1126C>G p.Pro376Ala | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | C | missense_variant c.1156T>C p.Ser386Pro | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4794098 | snp | A | G | missense_variant c.527A>G p.Lys176Arg | multidrug resistance protein MdtN | |
| 4794154 | snp | G | A | missense_variant c.583G>A p.Val195Ile | multidrug resistance protein MdtN | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829214 | snp | A | C | missense_variant c.140A>C p.Asn47Thr | copper resistance protein | |
| 5012908 | snp | C | A | missense_variant c.16C>A p.His6Asn | acid-resistance membrane protein | |
| 5013217 | snp | A | T | missense_variant c.325A>T p.Ile109Phe | acid-resistance membrane protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013331 | snp | C | A | missense_variant c.439C>A p.Leu147Ile | acid-resistance membrane protein | |
| 5013461 | snp | A | G | missense_variant c.569A>G p.Gln190Arg | acid-resistance membrane protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146849 | snp | G | A | missense_variant c.1060G>A p.Gly354Ser | acriflavine resistance protein E | |
| 339062 | snp | C | G | missense_variant c.207C>G p.Ile69Met | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339261 | snp | A | G | missense_variant c.406A>G p.Met136Val | 6-N-hydroxylaminopurine resistance protein | |
| 513290 | snp | T | C | missense_variant c.340A>G p.Ile114Val | zraP | zinc resistance protein |
| 513383 | snp | C | T | missense_variant c.247G>A p.Ala83Thr | zraP | zinc resistance protein |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513602 | snp | C | T | missense_variant c.28G>A p.Ala10Thr | zraP | zinc resistance protein |
| 513613 | snp | G | T | missense_variant c.17C>A p.Thr6Asn | zraP | zinc resistance protein |
| 884572 | snp | C | T | missense_variant c.857G>A p.Ser286Asn | copper resistance protein | |
| 884579 | snp | G | T | missense_variant c.850C>A p.Arg284Ser | copper resistance protein | |
| 884613 | snp | G | T | missense_variant c.816C>A p.Ser272Arg | copper resistance protein | |
| 885380 | snp | G | C | missense_variant c.49C>G p.Leu17Val | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1735855 | snp | A | C | missense_variant c.127T>G p.Leu43Val | camphor resistance protein CrcB | |
| 1735962 | snp | G | A | missense_variant c.20C>T p.Ala7Val | camphor resistance protein CrcB | |
| 2210268 | snp | A | T | missense_variant c.812T>A p.Phe271Tyr | multidrug resistance protein MdtH | |
| 2245680 | snp | A | T | missense_variant c.197A>T p.Tyr66Phe | multiple stress resistance protein BhsA | |
| 2482166 | snp | A | G | missense_variant c.41A>G p.Asn14Ser | quinolone resistance protein | |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | tellurite resistance protein TehB | |
| 3117395 | snp | C | G | missense_variant c.272G>C p.Ser91Thr | tellurite resistance protein TehB | |
| 3117433 | snp | A | T | missense_variant c.234T>A p.Asp78Glu | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3117636 | snp | G | C | missense_variant c.31C>G p.Gln11Glu | tellurite resistance protein TehB | |
| 3117659 | snp | T | G | missense_variant c.8A>C p.Lys3Thr | tellurite resistance protein TehB | |
| 3159943 | snp | A | G | missense_variant c.13A>G p.Thr5Ala | fusaric acid resistance protein | |
| 3159958 | snp | G | A | missense_variant c.28G>A p.Ala10Thr | fusaric acid resistance protein | |
| 3161233 | snp | G | A | missense_variant c.1303G>A p.Val435Ile | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3191119 | snp | C | G | missense_variant c.66C>G p.Asp22Glu | bleomycin resistance protein | |
| 3191197 | snp | C | G | missense_variant c.144C>G p.Asp48Glu | bleomycin resistance protein | |
| 3191241 | snp | A | C | missense_variant c.188A>C p.Gln63Pro | bleomycin resistance protein | |
| 3191318 | snp | A | C | missense_variant c.265A>C p.Ile89Leu | bleomycin resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3777872 | snp | G | A | missense_variant c.104C>T p.Ala35Val | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921844 | snp | T | C | missense_variant c.334A>G p.Ile112Val | multidrug resistance outer membrane protein MdtQ | |
| 3961492 | snp | C | T | missense_variant c.35C>T p.Thr12Ile | phage resistance protein | |
| 3961509 | snp | A | T | missense_variant c.52A>T p.Ser18Cys | phage resistance protein | |
| 3961849 | snp | C | A | missense_variant c.392C>A p.Ala131Asp | phage resistance protein | |
| 3962026 | snp | A | G | missense_variant c.569A>G p.Asp190Gly | phage resistance protein | |
| 3962101 | snp | C | T | missense_variant c.644C>T p.Ala215Val | phage resistance protein | |
| 3962292 | snp | A | G | missense_variant c.835A>G p.Ile279Val | phage resistance protein | |
| 3962657 | snp | G | C | missense_variant c.1200G>C p.Met400Ile | phage resistance protein | |
| 4442396 | snp | T | A | missense_variant c.1156T>A p.Ser386Thr | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4492965 | snp | C | A | missense_variant c.1258C>A p.Leu420Met | emrB | multidrug resistance protein B |
| 4493045 | snp | A | G | missense_variant c.1338A>G p.Ile446Met | emrB | multidrug resistance protein B |
| 4493154 | snp | A | G | missense_variant c.1447A>G p.Ile483Val | emrB | multidrug resistance protein B |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 5012938 | snp | G | A | missense_variant c.46G>A p.Val16Ile | acid-resistance membrane protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013526 | snp | T | C | missense_variant c.32T>C p.Val11Ala | acid-resistance protein | |
| 5013573 | snp | G | C | missense_variant c.79G>C p.Glu27Gln | acid-resistance protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 145977 | snp | C | A | missense_variant c.188C>A p.Pro63Gln | NA | acriflavine resistance protein E |
| 146127 | snp | T | C | missense_variant c.338T>C p.Val113Ala | NA | acriflavine resistance protein E |
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 339238 | snp | C | T | missense_variant c.383C>T p.Ala128Val | NA | 6-N-hydroxylaminopurine resistance protein |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | NA | copper resistance protein |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 885327 | snp | G | T | missense_variant c.102C>A p.His34Gln | NA | copper resistance protein |
| 1508402 | snp | C | T | missense_variant c.811G>A p.Ala271Thr | NA | Fosmidomycin resistance protein |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3117474 | snp | C | G | missense_variant c.193G>C p.Val65Leu | NA | tellurite resistance protein TehB |
| 3159958 | snp | G | A | missense_variant c.28G>A p.Ala10Thr | NA | fusaric acid resistance protein |
| 3160246 | snp | C | T | missense_variant c.316C>T p.Leu106Phe | NA | fusaric acid resistance protein |
| 3191223 | snp | C | G | missense_variant c.170C>G p.Thr57Ser | NA | bleomycin resistance protein |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3226295 | snp | G | A | missense_variant c.16C>T p.Arg6Cys | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 4829420 | snp | G | A | missense_variant c.346G>A p.Val116Ile | NA | copper resistance protein |
| 5013106 | snp | C | A | missense_variant c.214C>A p.Arg72Ser | NA | acid-resistance membrane protein |
| 5013455 | snp | A | G | missense_variant c.563A>G p.His188Arg | NA | acid-resistance membrane protein |
| 5013460 | snp | C | G | missense_variant c.568C>G p.Gln190Glu | NA | acid-resistance membrane protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 884204 | snp | C | G | missense_variant c.1225G>C p.Ala409Pro | NA | copper resistance protein |
| 884338 | snp | A | G | missense_variant c.1091T>C p.Val364Ala | NA | copper resistance protein |
| 884590 | snp | C | T | missense_variant c.839G>A p.Gly280Asp | NA | copper resistance protein |
| 884645 | snp | C | T | missense_variant c.784G>A p.Ala262Thr | NA | copper resistance protein |
| 884884 | snp | G | T | missense_variant c.545C>A p.Ala182Asp | NA | copper resistance protein |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 885217 | snp | T | A | missense_variant c.212A>T p.Asp71Val | NA | copper resistance protein |
| 1735636 | snp | C | G | missense_variant c.346G>C p.Val116Leu | NA | camphor resistance protein CrcB |
| 2482969 | snp | C | A | missense_variant c.844C>A p.Leu282Ile | NA | quinolone resistance protein |
| 3032781 | snp | A | T | missense_variant c.6A>T p.Gln2His | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3117207 | snp | C | T | missense_variant c.460G>A p.Asp154Asn | NA | tellurite resistance protein TehB |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3225725 | snp | T | G | missense_variant c.586A>C p.Asn196His | NA | bicyclomycin resistance protein |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 3962603 | snp | T | G | missense_variant c.1146T>G p.Phe382Leu | NA | phage resistance protein |
| 4793590 | snp | C | T | missense_variant c.19C>T p.Pro7Ser | NA | multidrug resistance protein MdtN |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 5013460 | snp | C | G | missense_variant c.568C>G p.Gln190Glu | NA | acid-resistance membrane protein |
| 5013702 | snp | C | T | missense_variant c.208C>T p.His70Tyr | NA | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 188902 | snp | G | C | missense_variant c.508G>C p.Val170Leu | emrD | multidrug resistance protein D |
| 442551 | snp | T | G | missense_variant c.400A>C p.Ile134Leu | chloramphenical resistance permease RarD | |
| 513563 | snp | C | A | missense_variant c.67G>T p.Ala23Ser | zraP | zinc resistance protein |
| 2482423 | snp | G | A | missense_variant c.298G>A p.Val100Ile | quinolone resistance protein | |
| 2483368 | snp | G | A | missense_variant c.1243G>A p.Gly415Ser | quinolone resistance protein | |
| 3048149 | snp | G | A | missense_variant c.1139C>T p.Ala380Val | methyl viologen resistance protein SmvA | |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | tellurite resistance protein TehB | |
| 3117207 | snp | C | T | missense_variant c.460G>A p.Asp154Asn | tellurite resistance protein TehB | |
| 3160355 | snp | G | A | missense_variant c.425G>A p.Ser142Asn | fusaric acid resistance protein | |
| 3191246 | snp | A | T | missense_variant c.193A>T p.Ser65Cys | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | copper resistance protein | |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | copper resistance protein | |
| 4829420 | snp | G | A | missense_variant c.346G>A p.Val116Ile | copper resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 885061 | snp | T | A | missense_variant c.368A>T p.Tyr123Phe | NA | copper resistance protein |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 1735636 | snp | C | G | missense_variant c.346G>C p.Val116Leu | NA | camphor resistance protein CrcB |
| 2482969 | snp | C | A | missense_variant c.844C>A p.Leu282Ile | NA | quinolone resistance protein |
| 3032781 | snp | A | T | missense_variant c.6A>T p.Gln2His | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3032816 | snp | C | T | missense_variant c.41C>T p.Thr14Ile | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3117207 | snp | C | T | missense_variant c.460G>A p.Asp154Asn | NA | tellurite resistance protein TehB |
| 3191385 | snp | A | T | missense_variant c.332A>T p.Tyr111Phe | NA | bleomycin resistance protein |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3225725 | snp | T | G | missense_variant c.586A>C p.Asn196His | NA | bicyclomycin resistance protein |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3921997 | snp | C | T | missense_variant c.181G>A p.Asp61Asn | NA | multidrug resistance outer membrane protein MdtQ |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 4793590 | snp | C | T | missense_variant c.19C>T p.Pro7Ser | NA | multidrug resistance protein MdtN |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 5013128 | snp | G | A | missense_variant c.236G>A p.Arg79His | NA | acid-resistance membrane protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 338902 | snp | C | T | missense_variant c.47C>T p.Ala16Val | NA | 6-N-hydroxylaminopurine resistance protein |
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 442551 | snp | T | G | missense_variant c.400A>C p.Ile134Leu | NA | chloramphenical resistance permease RarD |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 885415 | snp | G | T | missense_variant c.14C>A p.Thr5Lys | NA | copper resistance protein |
| 1735636 | snp | C | G | missense_variant c.346G>C p.Val116Leu | NA | camphor resistance protein CrcB |
| 2482762 | snp | G | A | missense_variant c.637G>A p.Val213Ile | NA | quinolone resistance protein |
| 2483422 | snp | C | T | missense_variant c.1297C>T p.His433Tyr | NA | quinolone resistance protein |
| 3048149 | snp | G | A | missense_variant c.1139C>T p.Ala380Val | NA | methyl viologen resistance protein SmvA |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3226295 | snp | G | A | missense_variant c.16C>T p.Arg6Cys | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921060 | snp | G | A | missense_variant c.1118C>T p.Ala373Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3961836 | snp | A | G | missense_variant c.379A>G p.Ser127Gly | NA | phage resistance protein |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 3962998 | snp | C | T | missense_variant c.1541C>T p.Ala514Val | NA | phage resistance protein |
| 4793837 | snp | A | T | missense_variant c.266A>T p.Asp89Val | NA | multidrug resistance protein MdtN |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 4829420 | snp | G | A | missense_variant c.346G>A p.Val116Ile | NA | copper resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 189023 | snp | A | C | missense_variant c.629A>C p.Asn210Thr | emrD | multidrug resistance protein D |
| 189094 | snp | A | C | missense_variant c.700A>C p.Met234Leu | emrD | multidrug resistance protein D |
| 189232 | snp | T | A | missense_variant c.838T>A p.Cys280Ser | emrD | multidrug resistance protein D |
| 189440 | snp | T | C | missense_variant c.1046T>C p.Val349Ala | emrD | multidrug resistance protein D |
| 442359 | snp | T | C | missense_variant c.592A>G p.Thr198Ala | chloramphenical resistance permease RarD | |
| 442560 | snp | G | C | missense_variant c.391C>G p.Leu131Val | chloramphenical resistance permease RarD | |
| 1508288 | snp | C | T | missense_variant c.925G>A p.Val309Ile | Fosmidomycin resistance protein | |
| 1508445 | snp | A | T | missense_variant c.768T>A p.His256Gln | Fosmidomycin resistance protein | |
| 1508513 | snp | T | C | missense_variant c.700A>G p.Met234Val | Fosmidomycin resistance protein | |
| 4441655 | snp | C | G | missense_variant c.415C>G p.Leu139Val | acriflavin resistance protein AcrA | |
| 4441943 | snp | C | A | missense_variant c.703C>A p.Arg235Ser | acriflavin resistance protein AcrA | |
| 4442099 | snp | T | G | missense_variant c.859T>G p.Ser287Ala | acriflavin resistance protein AcrA | |
| 4442109 | snp | T | A | missense_variant c.869T>A p.Leu290Gln | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | G | missense_variant c.1156T>G p.Ser386Ala | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4492006 | snp | A | G | missense_variant c.299A>G p.Asn100Ser | emrB | multidrug resistance protein B |
| 4492119 | snp | A | G | missense_variant c.412A>G p.Ile138Val | emrB | multidrug resistance protein B |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 189023 | snp | A | C | missense_variant c.629A>C p.Asn210Thr | emrD | multidrug resistance protein D |
| 189094 | snp | A | C | missense_variant c.700A>C p.Met234Leu | emrD | multidrug resistance protein D |
| 189232 | snp | T | A | missense_variant c.838T>A p.Cys280Ser | emrD | multidrug resistance protein D |
| 442359 | snp | T | C | missense_variant c.592A>G p.Thr198Ala | chloramphenical resistance permease RarD | |
| 442560 | snp | G | C | missense_variant c.391C>G p.Leu131Val | chloramphenical resistance permease RarD | |
| 1508288 | snp | C | T | missense_variant c.925G>A p.Val309Ile | Fosmidomycin resistance protein | |
| 1508445 | snp | A | T | missense_variant c.768T>A p.His256Gln | Fosmidomycin resistance protein | |
| 1508513 | snp | T | C | missense_variant c.700A>G p.Met234Val | Fosmidomycin resistance protein | |
| 4441943 | snp | C | A | missense_variant c.703C>A p.Arg235Ser | acriflavin resistance protein AcrA | |
| 4442099 | snp | T | G | missense_variant c.859T>G p.Ser287Ala | acriflavin resistance protein AcrA | |
| 4442109 | snp | T | A | missense_variant c.869T>A p.Leu290Gln | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | G | missense_variant c.1156T>G p.Ser386Ala | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4492006 | snp | A | G | missense_variant c.299A>G p.Asn100Ser | emrB | multidrug resistance protein B |
| 4492119 | snp | A | G | missense_variant c.412A>G p.Ile138Val | emrB | multidrug resistance protein B |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146859 | snp | C | T | missense_variant c.1070C>T p.Ala357Val | acriflavine resistance protein E | |
| 338880 | snp | G | A | missense_variant c.25G>A p.Val9Ile | 6-N-hydroxylaminopurine resistance protein | |
| 338982 | snp | C | G | missense_variant c.127C>G p.Gln43Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339179 | snp | G | C | missense_variant c.324G>C p.Glu108Asp | 6-N-hydroxylaminopurine resistance protein | |
| 339336 | snp | G | A | missense_variant c.481G>A p.Glu161Lys | 6-N-hydroxylaminopurine resistance protein | |
| 339505 | snp | G | A | missense_variant c.650G>A p.Ser217Asn | 6-N-hydroxylaminopurine resistance protein | |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513482 | snp | C | T | missense_variant c.148G>A p.Ala50Thr | zraP | zinc resistance protein |
| 513602 | snp | C | T | missense_variant c.28G>A p.Ala10Thr | zraP | zinc resistance protein |
| 884186 | snp | A | T | missense_variant c.1243T>A p.Ser415Thr | copper resistance protein | |
| 884234 | snp | C | A | missense_variant c.1195G>T p.Ala399Ser | copper resistance protein | |
| 884572 | snp | C | T | missense_variant c.857G>A p.Ser286Asn | copper resistance protein | |
| 884579 | snp | G | T | missense_variant c.850C>A p.Arg284Ser | copper resistance protein | |
| 885109 | snp | G | C | missense_variant c.320C>G p.Thr107Ser | copper resistance protein | |
| 885326 | snp | A | C | missense_variant c.103T>G p.Ser35Ala | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1735855 | snp | A | C | missense_variant c.127T>G p.Leu43Val | camphor resistance protein CrcB | |
| 2210353 | snp | C | T | missense_variant c.727G>A p.Ala243Thr | multidrug resistance protein MdtH | |
| 2482844 | snp | C | T | missense_variant c.719C>T p.Ala240Val | quinolone resistance protein | |
| 2483143 | snp | G | A | missense_variant c.1018G>A p.Ala340Thr | quinolone resistance protein | |
| 2483228 | snp | C | G | missense_variant c.1103C>G p.Ala368Gly | quinolone resistance protein | |
| 2483456 | snp | T | C | missense_variant c.1331T>C p.Val444Ala | quinolone resistance protein | |
| 3032783 | snp | G | C | missense_variant c.8G>C p.Ser3Thr | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 3047958 | snp | A | T | missense_variant c.1330T>A p.Ser444Thr | methyl viologen resistance protein SmvA | |
| 3048008 | snp | C | T | missense_variant c.1280G>A p.Gly427Asp | methyl viologen resistance protein SmvA | |
| 3048029 | snp | G | A | missense_variant c.1259C>T p.Ala420Val | methyl viologen resistance protein SmvA | |
| 3048391 | snp | T | C | missense_variant c.897A>G p.Ile299Met | methyl viologen resistance protein SmvA | |
| 3048548 | snp | G | A | missense_variant c.740C>T p.Ala247Val | methyl viologen resistance protein SmvA | |
| 3048600 | snp | G | T | missense_variant c.688C>A p.Leu230Ile | methyl viologen resistance protein SmvA | |
| 3049041 | snp | T | C | missense_variant c.247A>G p.Ile83Val | methyl viologen resistance protein SmvA | |
| 3117424 | snp | T | A | missense_variant c.243A>T p.Gln81His | tellurite resistance protein TehB | |
| 3117433 | snp | A | T | missense_variant c.234T>A p.Asp78Glu | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3159958 | snp | G | A | missense_variant c.28G>A p.Ala10Thr | fusaric acid resistance protein | |
| 3160224 | snp | C | G | missense_variant c.294C>G p.Phe98Leu | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3161458 | snp | G | A | missense_variant c.1528G>A p.Val510Ile | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3191241 | snp | A | C | missense_variant c.188A>C p.Gln63Pro | bleomycin resistance protein | |
| 3191318 | snp | A | C | missense_variant c.265A>C p.Ile89Leu | bleomycin resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921352 | snp | T | C | missense_variant c.826A>G p.Ser276Gly | multidrug resistance outer membrane protein MdtQ | |
| 3921844 | snp | T | C | missense_variant c.334A>G p.Ile112Val | multidrug resistance outer membrane protein MdtQ | |
| 3922046 | snp | A | C | missense_variant c.132T>G p.Asp44Glu | multidrug resistance outer membrane protein MdtQ | |
| 3922096 | snp | C | T | missense_variant c.82G>A p.Val28Ile | multidrug resistance outer membrane protein MdtQ | |
| 3961490 | snp | A | C | missense_variant c.33A>C p.Lys11Asn | phage resistance protein | |
| 3961501 | snp | C | T | missense_variant c.44C>T p.Thr15Ile | phage resistance protein | |
| 3961509 | snp | A | T | missense_variant c.52A>T p.Ser18Cys | phage resistance protein | |
| 3961591 | snp | C | T | missense_variant c.134C>T p.Ala45Val | phage resistance protein | |
| 3961836 | snp | A | C | missense_variant c.379A>C p.Ser127Arg | phage resistance protein | |
| 3961849 | snp | C | A | missense_variant c.392C>A p.Ala131Asp | phage resistance protein | |
| 3962101 | snp | C | T | missense_variant c.644C>T p.Ala215Val | phage resistance protein | |
| 3962466 | snp | A | G | missense_variant c.1009A>G p.Ser337Gly | phage resistance protein | |
| 4441361 | snp | A | G | missense_variant c.121A>G p.Thr41Ala | acriflavin resistance protein AcrA | |
| 4492014 | snp | A | T | missense_variant c.307A>T p.Thr103Ser | emrB | multidrug resistance protein B |
| 4492263 | snp | C | A | missense_variant c.556C>A p.Leu186Met | emrB | multidrug resistance protein B |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829214 | snp | A | G | missense_variant c.140A>G p.Asn47Ser | copper resistance protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013331 | snp | C | A | missense_variant c.439C>A p.Leu147Ile | acid-resistance membrane protein | |
| 5013526 | snp | T | C | missense_variant c.32T>C p.Val11Ala | acid-resistance protein | |
| 5013573 | snp | G | C | missense_variant c.79G>C p.Glu27Gln | acid-resistance protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 884789 | snp | G | T | missense_variant c.640C>A p.Arg214Ser | NA | copper resistance protein |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 1735636 | snp | C | G | missense_variant c.346G>C p.Val116Leu | NA | camphor resistance protein CrcB |
| 2482969 | snp | C | A | missense_variant c.844C>A p.Leu282Ile | NA | quinolone resistance protein |
| 3032781 | snp | A | T | missense_variant c.6A>T p.Gln2His | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3117207 | snp | C | T | missense_variant c.460G>A p.Asp154Asn | NA | tellurite resistance protein TehB |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3225725 | snp | T | G | missense_variant c.586A>C p.Asn196His | NA | bicyclomycin resistance protein |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 4793590 | snp | C | T | missense_variant c.19C>T p.Pro7Ser | NA | multidrug resistance protein MdtN |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 5013460 | snp | C | G | missense_variant c.568C>G p.Gln190Glu | NA | acid-resistance membrane protein |
| 5013702 | snp | C | T | missense_variant c.208C>T p.His70Tyr | NA | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146244 | snp | C | T | missense_variant c.455C>T p.Ser152Leu | NA | acriflavine resistance protein E |
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | NA | copper resistance protein |
| 885008 | snp | T | C | missense_variant c.421A>G p.Lys141Glu | NA | copper resistance protein |
| 885061 | snp | T | A | missense_variant c.368A>T p.Tyr123Phe | NA | copper resistance protein |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | NA | copper resistance protein |
| 2245508 | snp | A | T | missense_variant c.25A>T p.Ile9Phe | NA | multiple stress resistance protein BhsA |
| 2482418 | snp | T | A | missense_variant c.293T>A p.Leu98Gln | NA | quinolone resistance protein |
| 2483203 | snp | G | A | missense_variant c.1078G>A p.Ala360Thr | NA | quinolone resistance protein |
| 2483281 | snp | G | A | missense_variant c.1156G>A p.Asp386Asn | NA | quinolone resistance protein |
| 2483485 | snp | G | A | missense_variant c.1360G>A p.Ala454Thr | NA | quinolone resistance protein |
| 3032806 | snp | G | A | missense_variant c.31G>A p.Val11Ile | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3048006 | snp | C | T | missense_variant c.1282G>A p.Ala428Thr | NA | methyl viologen resistance protein SmvA |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3226253 | snp | C | T | missense_variant c.58G>A p.Gly20Ser | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3961966 | snp | C | T | missense_variant c.509C>T p.Thr170Ile | NA | phage resistance protein |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 4441263 | snp | G | A | missense_variant c.23G>A p.Gly8Glu | NA | acriflavin resistance protein AcrA |
| 4793590 | snp | C | T | missense_variant c.19C>T p.Pro7Ser | NA | multidrug resistance protein MdtN |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829252 | snp | C | A | missense_variant c.178C>A p.Leu60Ile | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 5013460 | snp | C | G | missense_variant c.568C>G p.Gln190Glu | NA | acid-resistance membrane protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 188902 | snp | G | C | missense_variant c.508G>C p.Val170Leu | emrD | multidrug resistance protein D |
| 442551 | snp | T | G | missense_variant c.400A>C p.Ile134Leu | chloramphenical resistance permease RarD | |
| 513563 | snp | C | A | missense_variant c.67G>T p.Ala23Ser | zraP | zinc resistance protein |
| 2482423 | snp | G | A | missense_variant c.298G>A p.Val100Ile | quinolone resistance protein | |
| 2483368 | snp | G | A | missense_variant c.1243G>A p.Gly415Ser | quinolone resistance protein | |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | tellurite resistance protein TehB | |
| 3117207 | snp | C | T | missense_variant c.460G>A p.Asp154Asn | tellurite resistance protein TehB | |
| 3160355 | snp | G | A | missense_variant c.425G>A p.Ser142Asn | fusaric acid resistance protein | |
| 3191246 | snp | A | T | missense_variant c.193A>T p.Ser65Cys | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | copper resistance protein | |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | copper resistance protein | |
| 4829420 | snp | G | A | missense_variant c.346G>A p.Val116Ile | copper resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146714 | snp | G | A | missense_variant c.925G>A p.Asp309Asn | acriflavine resistance protein E | |
| 146742 | snp | C | A | missense_variant c.953C>A p.Ala318Asp | acriflavine resistance protein E | |
| 146754 | snp | A | C | missense_variant c.965A>C p.Glu322Ala | acriflavine resistance protein E | |
| 146899 | snp | C | A | missense_variant c.1110C>A p.Asn370Lys | acriflavine resistance protein E | |
| 188602 | snp | G | A | missense_variant c.208G>A p.Val70Ile | emrD | multidrug resistance protein D |
| 189280 | snp | A | G | missense_variant c.886A>G p.Ile296Val | emrD | multidrug resistance protein D |
| 189473 | snp | C | A | missense_variant c.1079C>A p.Thr360Asn | emrD | multidrug resistance protein D |
| 338901 | snp | G | A | missense_variant c.46G>A p.Ala16Thr | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339086 | snp | G | T | missense_variant c.231G>T p.Glu77Asp | 6-N-hydroxylaminopurine resistance protein | |
| 339237 | snp | G | T | missense_variant c.382G>T p.Ala128Ser | 6-N-hydroxylaminopurine resistance protein | |
| 339359 | snp | T | G | missense_variant c.504T>G p.Asp168Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339395 | snp | G | T | missense_variant c.540G>T p.Gln180His | 6-N-hydroxylaminopurine resistance protein | |
| 442554 | snp | C | T | missense_variant c.397G>A p.Val133Met | chloramphenical resistance permease RarD | |
| 513223 | snp | G | C | missense_variant c.407C>G p.Ala136Gly | zraP | zinc resistance protein |
| 513290 | snp | T | G | missense_variant c.340A>C p.Ile114Leu | zraP | zinc resistance protein |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513522 | snp | C | G | missense_variant c.108G>C p.Met36Ile | zraP | zinc resistance protein |
| 513563 | snp | C | T | missense_variant c.67G>A p.Ala23Thr | zraP | zinc resistance protein |
| 513571 | snp | G | C | missense_variant c.59C>G p.Ala20Gly | zraP | zinc resistance protein |
| 884590 | snp | C | T | missense_variant c.839G>A p.Gly280Asp | copper resistance protein | |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | copper resistance protein | |
| 884975 | snp | T | G | missense_variant c.454A>C p.Lys152Gln | copper resistance protein | |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418452 | snp | C | T | missense_variant c.406G>A p.Ala136Thr | oxidative-stress-resistance chaperone | |
| 1418602 | snp | T | G | missense_variant c.256A>C p.Thr86Pro | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1508432 | snp | T | A | missense_variant c.781A>T p.Thr261Ser | Fosmidomycin resistance protein | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1509185 | snp | A | C | missense_variant c.28T>G p.Leu10Val | Fosmidomycin resistance protein | |
| 2482166 | snp | A | G | missense_variant c.41A>G p.Asn14Ser | quinolone resistance protein | |
| 2482402 | snp | G | A | missense_variant c.277G>A p.Val93Ile | quinolone resistance protein | |
| 2482835 | snp | C | G | missense_variant c.710C>G p.Thr237Ser | quinolone resistance protein | |
| 2483199 | snp | A | T | missense_variant c.1074A>T p.Glu358Asp | quinolone resistance protein | |
| 2483456 | snp | T | C | missense_variant c.1331T>C p.Val444Ala | quinolone resistance protein | |
| 3032783 | snp | G | A | missense_variant c.8G>A p.Ser3Asn | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 3048036 | snp | A | T | missense_variant c.1252T>A p.Ser418Thr | methyl viologen resistance protein SmvA | |
| 3048391 | snp | T | C | missense_variant c.897A>G p.Ile299Met | methyl viologen resistance protein SmvA | |
| 3048600 | snp | G | T | missense_variant c.688C>A p.Leu230Ile | methyl viologen resistance protein SmvA | |
| 3048690 | snp | C | T | missense_variant c.598G>A p.Val200Ile | methyl viologen resistance protein SmvA | |
| 3048718 | snp | T | G | missense_variant c.570A>C p.Glu190Asp | methyl viologen resistance protein SmvA | |
| 3049041 | snp | T | C | missense_variant c.247A>G p.Ile83Val | methyl viologen resistance protein SmvA | |
| 3117314 | snp | G | C | missense_variant c.353C>G p.Ala118Gly | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3117483 | snp | G | C | missense_variant c.184C>G p.Pro62Ala | tellurite resistance protein TehB | |
| 3117507 | snp | C | T | missense_variant c.160G>A p.Ala54Thr | tellurite resistance protein TehB | |
| 3117636 | snp | G | C | missense_variant c.31C>G p.Gln11Glu | tellurite resistance protein TehB | |
| 3161233 | snp | G | A | missense_variant c.1303G>A p.Val435Ile | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921433 | snp | T | C | missense_variant c.745A>G p.Thr249Ala | multidrug resistance outer membrane protein MdtQ | |
| 3961497 | snp | T | A | missense_variant c.40T>A p.Leu14Ile | phage resistance protein | |
| 3961797 | snp | A | G | missense_variant c.340A>G p.Asn114Asp | phage resistance protein | |
| 3961810 | snp | G | C | missense_variant c.353G>C p.Ser118Thr | phage resistance protein | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 3962100 | snp | G | A | missense_variant c.643G>A p.Ala215Thr | phage resistance protein | |
| 3962292 | snp | A | G | missense_variant c.835A>G p.Ile279Val | phage resistance protein | |
| 3962466 | snp | A | C | missense_variant c.1009A>C p.Ser337Arg | phage resistance protein | |
| 4441278 | snp | C | G | missense_variant c.38C>G p.Thr13Ser | acriflavin resistance protein AcrA | |
| 4442311 | snp | T | G | missense_variant c.1071T>G p.Asn357Lys | acriflavin resistance protein AcrA | |
| 4442366 | snp | C | G | missense_variant c.1126C>G p.Pro376Ala | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | C | missense_variant c.1156T>C p.Ser386Pro | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4794098 | snp | A | G | missense_variant c.527A>G p.Lys176Arg | multidrug resistance protein MdtN | |
| 4794154 | snp | G | A | missense_variant c.583G>A p.Val195Ile | multidrug resistance protein MdtN | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829214 | snp | A | C | missense_variant c.140A>C p.Asn47Thr | copper resistance protein | |
| 5012908 | snp | C | A | missense_variant c.16C>A p.His6Asn | acid-resistance membrane protein | |
| 5013217 | snp | A | T | missense_variant c.325A>T p.Ile109Phe | acid-resistance membrane protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013331 | snp | C | A | missense_variant c.439C>A p.Leu147Ile | acid-resistance membrane protein | |
| 5013461 | snp | A | G | missense_variant c.569A>G p.Gln190Arg | acid-resistance membrane protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 189023 | snp | A | C | missense_variant c.629A>C p.Asn210Thr | emrD | multidrug resistance protein D |
| 189094 | snp | A | C | missense_variant c.700A>C p.Met234Leu | emrD | multidrug resistance protein D |
| 189232 | snp | T | A | missense_variant c.838T>A p.Cys280Ser | emrD | multidrug resistance protein D |
| 442359 | snp | T | C | missense_variant c.592A>G p.Thr198Ala | chloramphenical resistance permease RarD | |
| 442560 | snp | G | C | missense_variant c.391C>G p.Leu131Val | chloramphenical resistance permease RarD | |
| 1508288 | snp | C | T | missense_variant c.925G>A p.Val309Ile | Fosmidomycin resistance protein | |
| 1508445 | snp | A | T | missense_variant c.768T>A p.His256Gln | Fosmidomycin resistance protein | |
| 4441943 | snp | C | A | missense_variant c.703C>A p.Arg235Ser | acriflavin resistance protein AcrA | |
| 4442099 | snp | T | G | missense_variant c.859T>G p.Ser287Ala | acriflavin resistance protein AcrA | |
| 4442109 | snp | T | A | missense_variant c.869T>A p.Leu290Gln | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | G | missense_variant c.1156T>G p.Ser386Ala | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4492006 | snp | A | G | missense_variant c.299A>G p.Asn100Ser | emrB | multidrug resistance protein B |
| 4492119 | snp | A | G | missense_variant c.412A>G p.Ile138Val | emrB | multidrug resistance protein B |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146714 | snp | G | A | missense_variant c.925G>A p.Asp309Asn | acriflavine resistance protein E | |
| 146742 | snp | C | A | missense_variant c.953C>A p.Ala318Asp | acriflavine resistance protein E | |
| 146754 | snp | A | C | missense_variant c.965A>C p.Glu322Ala | acriflavine resistance protein E | |
| 188602 | snp | G | A | missense_variant c.208G>A p.Val70Ile | emrD | multidrug resistance protein D |
| 189280 | snp | A | G | missense_variant c.886A>G p.Ile296Val | emrD | multidrug resistance protein D |
| 189473 | snp | C | A | missense_variant c.1079C>A p.Thr360Asn | emrD | multidrug resistance protein D |
| 338901 | snp | G | A | missense_variant c.46G>A p.Ala16Thr | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339080 | snp | G | T | missense_variant c.225G>T p.Gln75His | 6-N-hydroxylaminopurine resistance protein | |
| 339086 | snp | G | T | missense_variant c.231G>T p.Glu77Asp | 6-N-hydroxylaminopurine resistance protein | |
| 339237 | snp | G | T | missense_variant c.382G>T p.Ala128Ser | 6-N-hydroxylaminopurine resistance protein | |
| 339359 | snp | T | G | missense_variant c.504T>G p.Asp168Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339395 | snp | G | T | missense_variant c.540G>T p.Gln180His | 6-N-hydroxylaminopurine resistance protein | |
| 442554 | snp | C | T | missense_variant c.397G>A p.Val133Met | chloramphenical resistance permease RarD | |
| 513211 | snp | A | C | missense_variant c.419T>G p.Met140Arg | zraP | zinc resistance protein |
| 513223 | snp | G | C | missense_variant c.407C>G p.Ala136Gly | zraP | zinc resistance protein |
| 513290 | snp | T | G | missense_variant c.340A>C p.Ile114Leu | zraP | zinc resistance protein |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513522 | snp | C | G | missense_variant c.108G>C p.Met36Ile | zraP | zinc resistance protein |
| 513563 | snp | C | T | missense_variant c.67G>A p.Ala23Thr | zraP | zinc resistance protein |
| 513571 | snp | G | C | missense_variant c.59C>G p.Ala20Gly | zraP | zinc resistance protein |
| 884590 | snp | C | T | missense_variant c.839G>A p.Gly280Asp | copper resistance protein | |
| 884801 | snp | T | G | missense_variant c.628A>C p.Lys210Gln | copper resistance protein | |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | copper resistance protein | |
| 884975 | snp | T | G | missense_variant c.454A>C p.Lys152Gln | copper resistance protein | |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418602 | snp | T | G | missense_variant c.256A>C p.Thr86Pro | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1508432 | snp | T | A | missense_variant c.781A>T p.Thr261Ser | Fosmidomycin resistance protein | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1509185 | snp | A | C | missense_variant c.28T>G p.Leu10Val | Fosmidomycin resistance protein | |
| 2209992 | snp | A | G | missense_variant c.1088T>C p.Val363Ala | multidrug resistance protein MdtH | |
| 2482166 | snp | A | G | missense_variant c.41A>G p.Asn14Ser | quinolone resistance protein | |
| 2482402 | snp | G | A | missense_variant c.277G>A p.Val93Ile | quinolone resistance protein | |
| 2482835 | snp | C | G | missense_variant c.710C>G p.Thr237Ser | quinolone resistance protein | |
| 2483199 | snp | A | T | missense_variant c.1074A>T p.Glu358Asp | quinolone resistance protein | |
| 2483239 | snp | C | A | missense_variant c.1114C>A p.Leu372Met | quinolone resistance protein | |
| 2483456 | snp | T | C | missense_variant c.1331T>C p.Val444Ala | quinolone resistance protein | |
| 3032783 | snp | G | A | missense_variant c.8G>A p.Ser3Asn | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 3048036 | snp | A | T | missense_variant c.1252T>A p.Ser418Thr | methyl viologen resistance protein SmvA | |
| 3048391 | snp | T | C | missense_variant c.897A>G p.Ile299Met | methyl viologen resistance protein SmvA | |
| 3048600 | snp | G | T | missense_variant c.688C>A p.Leu230Ile | methyl viologen resistance protein SmvA | |
| 3048690 | snp | C | T | missense_variant c.598G>A p.Val200Ile | methyl viologen resistance protein SmvA | |
| 3048718 | snp | T | G | missense_variant c.570A>C p.Glu190Asp | methyl viologen resistance protein SmvA | |
| 3049041 | snp | T | C | missense_variant c.247A>G p.Ile83Val | methyl viologen resistance protein SmvA | |
| 3117314 | snp | G | C | missense_variant c.353C>G p.Ala118Gly | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3117483 | snp | G | C | missense_variant c.184C>G p.Pro62Ala | tellurite resistance protein TehB | |
| 3117507 | snp | C | T | missense_variant c.160G>A p.Ala54Thr | tellurite resistance protein TehB | |
| 3117519 | snp | C | A | missense_variant c.148G>T p.Ala50Ser | tellurite resistance protein TehB | |
| 3117636 | snp | G | C | missense_variant c.31C>G p.Gln11Glu | tellurite resistance protein TehB | |
| 3161233 | snp | G | A | missense_variant c.1303G>A p.Val435Ile | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225516 | snp | C | A | missense_variant c.795G>T p.Trp265Cys | bicyclomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921433 | snp | T | C | missense_variant c.745A>G p.Thr249Ala | multidrug resistance outer membrane protein MdtQ | |
| 3961509 | snp | A | T | missense_variant c.52A>T p.Ser18Cys | phage resistance protein | |
| 3961797 | snp | A | G | missense_variant c.340A>G p.Asn114Asp | phage resistance protein | |
| 3961810 | snp | G | C | missense_variant c.353G>C p.Ser118Thr | phage resistance protein | |
| 3961836 | snp | A | C | missense_variant c.379A>C p.Ser127Arg | phage resistance protein | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 3962100 | snp | G | A | missense_variant c.643G>A p.Ala215Thr | phage resistance protein | |
| 3962292 | snp | A | G | missense_variant c.835A>G p.Ile279Val | phage resistance protein | |
| 3962466 | snp | A | C | missense_variant c.1009A>C p.Ser337Arg | phage resistance protein | |
| 4442311 | snp | T | G | missense_variant c.1071T>G p.Asn357Lys | acriflavin resistance protein AcrA | |
| 4442396 | snp | T | C | missense_variant c.1156T>C p.Ser386Pro | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4794098 | snp | A | G | missense_variant c.527A>G p.Lys176Arg | multidrug resistance protein MdtN | |
| 4794154 | snp | G | A | missense_variant c.583G>A p.Val195Ile | multidrug resistance protein MdtN | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829214 | snp | A | C | missense_variant c.140A>C p.Asn47Thr | copper resistance protein | |
| 5012908 | snp | C | A | missense_variant c.16C>A p.His6Asn | acid-resistance membrane protein | |
| 5013217 | snp | A | T | missense_variant c.325A>T p.Ile109Phe | acid-resistance membrane protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013331 | snp | C | A | missense_variant c.439C>A p.Leu147Ile | acid-resistance membrane protein | |
| 5013461 | snp | A | G | missense_variant c.569A>G p.Gln190Arg | acid-resistance membrane protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146714 | snp | G | A | missense_variant c.925G>A p.Asp309Asn | acriflavine resistance protein E | |
| 146742 | snp | C | A | missense_variant c.953C>A p.Ala318Asp | acriflavine resistance protein E | |
| 146754 | snp | A | C | missense_variant c.965A>C p.Glu322Ala | acriflavine resistance protein E | |
| 188602 | snp | G | A | missense_variant c.208G>A p.Val70Ile | emrD | multidrug resistance protein D |
| 189280 | snp | A | G | missense_variant c.886A>G p.Ile296Val | emrD | multidrug resistance protein D |
| 189473 | snp | C | A | missense_variant c.1079C>A p.Thr360Asn | emrD | multidrug resistance protein D |
| 338901 | snp | G | A | missense_variant c.46G>A p.Ala16Thr | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339080 | snp | G | T | missense_variant c.225G>T p.Gln75His | 6-N-hydroxylaminopurine resistance protein | |
| 339086 | snp | G | T | missense_variant c.231G>T p.Glu77Asp | 6-N-hydroxylaminopurine resistance protein | |
| 339237 | snp | G | T | missense_variant c.382G>T p.Ala128Ser | 6-N-hydroxylaminopurine resistance protein | |
| 339359 | snp | T | G | missense_variant c.504T>G p.Asp168Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339395 | snp | G | T | missense_variant c.540G>T p.Gln180His | 6-N-hydroxylaminopurine resistance protein | |
| 513211 | snp | A | C | missense_variant c.419T>G p.Met140Arg | zraP | zinc resistance protein |
| 513223 | snp | G | C | missense_variant c.407C>G p.Ala136Gly | zraP | zinc resistance protein |
| 513290 | snp | T | G | missense_variant c.340A>C p.Ile114Leu | zraP | zinc resistance protein |
| 513475 | snp | A | G | missense_variant c.155T>C p.Val52Ala | zraP | zinc resistance protein |
| 513522 | snp | C | G | missense_variant c.108G>C p.Met36Ile | zraP | zinc resistance protein |
| 513563 | snp | C | T | missense_variant c.67G>A p.Ala23Thr | zraP | zinc resistance protein |
| 513571 | snp | G | C | missense_variant c.59C>G p.Ala20Gly | zraP | zinc resistance protein |
| 884590 | snp | C | T | missense_variant c.839G>A p.Gly280Asp | copper resistance protein | |
| 884801 | snp | T | G | missense_variant c.628A>C p.Lys210Gln | copper resistance protein | |
| 884806 | snp | A | G | missense_variant c.623T>C p.Met208Thr | copper resistance protein | |
| 884975 | snp | T | G | missense_variant c.454A>C p.Lys152Gln | copper resistance protein | |
| 885118 | snp | A | G | missense_variant c.311T>C p.Val104Ala | copper resistance protein | |
| 885379 | snp | A | G | missense_variant c.50T>C p.Leu17Pro | copper resistance protein | |
| 885380 | snp | G | C | missense_variant c.49C>G p.Leu17Val | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418602 | snp | T | G | missense_variant c.256A>C p.Thr86Pro | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1508432 | snp | T | A | missense_variant c.781A>T p.Thr261Ser | Fosmidomycin resistance protein | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1509185 | snp | A | C | missense_variant c.28T>G p.Leu10Val | Fosmidomycin resistance protein | |
| 2209992 | snp | A | G | missense_variant c.1088T>C p.Val363Ala | multidrug resistance protein MdtH | |
| 2482166 | snp | A | G | missense_variant c.41A>G p.Asn14Ser | quinolone resistance protein | |
| 2482402 | snp | G | A | missense_variant c.277G>A p.Val93Ile | quinolone resistance protein | |
| 2482835 | snp | C | G | missense_variant c.710C>G p.Thr237Ser | quinolone resistance protein | |
| 2483199 | snp | A | T | missense_variant c.1074A>T p.Glu358Asp | quinolone resistance protein | |
| 2483239 | snp | C | A | missense_variant c.1114C>A p.Leu372Met | quinolone resistance protein | |
| 2483456 | snp | T | C | missense_variant c.1331T>C p.Val444Ala | quinolone resistance protein | |
| 3032783 | snp | G | A | missense_variant c.8G>A p.Ser3Asn | glyoxalase/bleomycin resistance protein/dioxygenase | |
| 3048391 | snp | T | C | missense_variant c.897A>G p.Ile299Met | methyl viologen resistance protein SmvA | |
| 3048600 | snp | G | T | missense_variant c.688C>A p.Leu230Ile | methyl viologen resistance protein SmvA | |
| 3048690 | snp | C | T | missense_variant c.598G>A p.Val200Ile | methyl viologen resistance protein SmvA | |
| 3048718 | snp | T | G | missense_variant c.570A>C p.Glu190Asp | methyl viologen resistance protein SmvA | |
| 3049041 | snp | T | C | missense_variant c.247A>G p.Ile83Val | methyl viologen resistance protein SmvA | |
| 3117314 | snp | G | C | missense_variant c.353C>G p.Ala118Gly | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3117483 | snp | G | C | missense_variant c.184C>G p.Pro62Ala | tellurite resistance protein TehB | |
| 3117507 | snp | C | T | missense_variant c.160G>A p.Ala54Thr | tellurite resistance protein TehB | |
| 3117519 | snp | C | A | missense_variant c.148G>T p.Ala50Ser | tellurite resistance protein TehB | |
| 3117636 | snp | G | C | missense_variant c.31C>G p.Gln11Glu | tellurite resistance protein TehB | |
| 3161233 | snp | G | A | missense_variant c.1303G>A p.Val435Ile | fusaric acid resistance protein | |
| 3161362 | snp | G | T | missense_variant c.1432G>T p.Ala478Ser | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3191351 | snp | A | G | missense_variant c.298A>G p.Ile100Val | bleomycin resistance protein | |
| 3225516 | snp | C | A | missense_variant c.795G>T p.Trp265Cys | bicyclomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921433 | snp | T | C | missense_variant c.745A>G p.Thr249Ala | multidrug resistance outer membrane protein MdtQ | |
| 3961509 | snp | A | T | missense_variant c.52A>T p.Ser18Cys | phage resistance protein | |
| 3961797 | snp | A | G | missense_variant c.340A>G p.Asn114Asp | phage resistance protein | |
| 3961810 | snp | G | C | missense_variant c.353G>C p.Ser118Thr | phage resistance protein | |
| 3961836 | snp | A | C | missense_variant c.379A>C p.Ser127Arg | phage resistance protein | |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | phage resistance protein | |
| 3962100 | snp | G | A | missense_variant c.643G>A p.Ala215Thr | phage resistance protein | |
| 3962292 | snp | A | G | missense_variant c.835A>G p.Ile279Val | phage resistance protein | |
| 3962466 | snp | A | C | missense_variant c.1009A>C p.Ser337Arg | phage resistance protein | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4794154 | snp | G | A | missense_variant c.583G>A p.Val195Ile | multidrug resistance protein MdtN | |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829214 | snp | A | C | missense_variant c.140A>C p.Asn47Thr | copper resistance protein | |
| 5012908 | snp | C | A | missense_variant c.16C>A p.His6Asn | acid-resistance membrane protein | |
| 5013217 | snp | A | T | missense_variant c.325A>T p.Ile109Phe | acid-resistance membrane protein | |
| 5013274 | snp | C | A | missense_variant c.382C>A p.Gln128Lys | acid-resistance membrane protein | |
| 5013331 | snp | C | A | missense_variant c.439C>A p.Leu147Ile | acid-resistance membrane protein | |
| 5013461 | snp | A | G | missense_variant c.569A>G p.Gln190Arg | acid-resistance membrane protein | |
| 5013741 | snp | G | C | missense_variant c.247G>C p.Glu83Gln | acid-resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 145802 | snp | A | C | missense_variant c.11T>G p.Met4Arg | NA | acriflavine resistance protein E |
| 146127 | snp | T | C | missense_variant c.338T>C p.Val113Ala | NA | acriflavine resistance protein E |
| 338926 | snp | G | A | missense_variant c.71G>A p.Gly24Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 338973 | snp | A | G | missense_variant c.118A>G p.Asn40Asp | NA | 6-N-hydroxylaminopurine resistance protein |
| 339238 | snp | C | T | missense_variant c.383C>T p.Ala128Val | NA | 6-N-hydroxylaminopurine resistance protein |
| 885326 | snp | A | C | missense_variant c.103T>G p.Ser35Ala | NA | copper resistance protein |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | NA | oxidative-stress-resistance chaperone |
| 1508402 | snp | C | T | missense_variant c.811G>A p.Ala271Thr | NA | Fosmidomycin resistance protein |
| 1735636 | snp | C | G | missense_variant c.346G>C p.Val116Leu | NA | camphor resistance protein CrcB |
| 2483395 | snp | G | A | missense_variant c.1270G>A p.Ala424Thr | NA | quinolone resistance protein |
| 3032791 | snp | G | A | missense_variant c.16G>A p.Val6Ile | NA | glyoxalase/bleomycin resistance protein/dioxygenase |
| 3117128 | snp | A | G | missense_variant c.539T>C p.Val180Ala | NA | tellurite resistance protein TehB |
| 3117659 | snp | T | A | missense_variant c.8A>T p.Lys3Met | NA | tellurite resistance protein TehB |
| 3191253 | snp | A | T | missense_variant c.200A>T p.Asp67Val | NA | bleomycin resistance protein |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | NA | bicyclomycin resistance protein |
| 3226250 | snp | C | T | missense_variant c.61G>A p.Gly21Ser | NA | bicyclomycin resistance protein |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | NA | tellurite resistance protein |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | NA | multidrug resistance outer membrane protein MdtQ |
| 3962086 | snp | T | C | missense_variant c.629T>C p.Val210Ala | NA | phage resistance protein |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | NA | copper resistance protein |
| 4829226 | snp | T | C | missense_variant c.152T>C p.Val51Ala | NA | copper resistance protein |
| 4829387 | snp | C | T | missense_variant c.313C>T p.Pro105Ser | NA | copper resistance protein |
| 4829420 | snp | G | A | missense_variant c.346G>A p.Val116Ile | NA | copper resistance protein |
| GenomePosition | Type | ReferenceAllele | AlternateAllele | Consequence | AffectedGene | Product |
|---|---|---|---|---|---|---|
| 146849 | snp | G | A | missense_variant c.1060G>A p.Gly354Ser | acriflavine resistance protein E | |
| 339062 | snp | C | G | missense_variant c.207C>G p.Ile69Met | 6-N-hydroxylaminopurine resistance protein | |
| 339068 | snp | C | A | missense_variant c.213C>A p.Asp71Glu | 6-N-hydroxylaminopurine resistance protein | |
| 339261 | snp | A | G | missense_variant c.406A>G p.Met136Val | 6-N-hydroxylaminopurine resistance protein | |
| 513290 | snp | T | C | missense_variant c.340A>G p.Ile114Val | zraP | zinc resistance protein |
| 884186 | snp | A | G | missense_variant c.1243T>C p.Ser415Pro | copper resistance protein | |
| 884348 | snp | T | G | missense_variant c.1081A>C p.Ile361Leu | copper resistance protein | |
| 884776 | snp | G | T | missense_variant c.653C>A p.Thr218Lys | copper resistance protein | |
| 885359 | snp | C | T | missense_variant c.70G>A p.Ala24Thr | copper resistance protein | |
| 885380 | snp | G | C | missense_variant c.49C>G p.Leu17Val | copper resistance protein | |
| 1418447 | snp | C | A | missense_variant c.411G>T p.Glu137Asp | oxidative-stress-resistance chaperone | |
| 1418602 | snp | T | G | missense_variant c.256A>C p.Thr86Pro | oxidative-stress-resistance chaperone | |
| 1418734 | snp | T | C | missense_variant c.124A>G p.Ser42Gly | oxidative-stress-resistance chaperone | |
| 1508544 | snp | C | A | missense_variant c.669G>T p.Lys223Asn | Fosmidomycin resistance protein | |
| 1735855 | snp | A | C | missense_variant c.127T>G p.Leu43Val | camphor resistance protein CrcB | |
| 2210643 | snp | G | C | missense_variant c.437C>G p.Ala146Gly | multidrug resistance protein MdtH | |
| 2245680 | snp | A | T | missense_variant c.197A>T p.Tyr66Phe | multiple stress resistance protein BhsA | |
| 2483199 | snp | A | T | missense_variant c.1074A>T p.Glu358Asp | quinolone resistance protein | |
| 2483221 | snp | G | C | missense_variant c.1096G>C p.Val366Leu | quinolone resistance protein | |
| 3117395 | snp | C | G | missense_variant c.272G>C p.Ser91Thr | tellurite resistance protein TehB | |
| 3117474 | snp | C | T | missense_variant c.193G>A p.Val65Ile | tellurite resistance protein TehB | |
| 3159943 | snp | A | G | missense_variant c.13A>G p.Thr5Ala | fusaric acid resistance protein | |
| 3159958 | snp | G | A | missense_variant c.28G>A p.Ala10Thr | fusaric acid resistance protein | |
| 3161816 | snp | A | T | missense_variant c.1886A>T p.Gln629Leu | fusaric acid resistance protein | |
| 3161831 | snp | C | T | missense_variant c.1901C>T p.Ala634Val | fusaric acid resistance protein | |
| 3161923 | snp | G | A | missense_variant c.1993G>A p.Val665Met | fusaric acid resistance protein | |
| 3191119 | snp | C | G | missense_variant c.66C>G p.Asp22Glu | bleomycin resistance protein | |
| 3225577 | snp | T | G | missense_variant c.734A>C p.Glu245Ala | bicyclomycin resistance protein | |
| 3777825 | snp | T | C | missense_variant c.151A>G p.Thr51Ala | tellurite resistance protein | |
| 3921241 | snp | T | C | missense_variant c.937A>G p.Met313Val | multidrug resistance outer membrane protein MdtQ | |
| 3921433 | snp | T | C | missense_variant c.745A>G p.Thr249Ala | multidrug resistance outer membrane protein MdtQ | |
| 3921844 | snp | T | C | missense_variant c.334A>G p.Ile112Val | multidrug resistance outer membrane protein MdtQ | |
| 4441325 | snp | G | A | missense_variant c.85G>A p.Asp29Asn | acriflavin resistance protein AcrA | |
| 4442405 | snp | A | G | missense_variant c.1165A>G p.Thr389Ala | acriflavin resistance protein AcrA | |
| 4492965 | snp | C | A | missense_variant c.1258C>A p.Leu420Met | emrB | multidrug resistance protein B |
| 4493045 | snp | A | G | missense_variant c.1338A>G p.Ile446Met | emrB | multidrug resistance protein B |
| 4829111 | snp | T | C | missense_variant c.37T>C p.Phe13Leu | copper resistance protein | |
| 4829217 | snp | A | C | missense_variant c.143A>C p.Gln48Pro | copper resistance protein | |
| 5013526 | snp | T | C | missense_variant c.32T>C p.Val11Ala | acid-resistance protein | |
| 5013544 | snp | G | A | missense_variant c.50G>A p.Cys17Tyr | acid-resistance protein | |
| 5013573 | snp | G | C | missense_variant c.79G>C p.Glu27Gln | acid-resistance protein |
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Resistance | Antibiotic that the gene confers resistance to |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00056 | 19730 | 20533 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00056 | 18894 | 19730 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00056 | 13616 | 14491 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00279 | 1150 | 2009 | blaOKP-B-16_1 | 0/0 | 99.9 | 99.8 | AM850918 | blaOKP-B-16 | |
| contig00056 | 17313 | 18173 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00499 | 91 | 732 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00483 | 183 | 665 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00138 | 10722 | 11141 | fosA_6 | 0/0 | 100.0 | 93.3 | ACZD01000244 | fosA | Fosfomycin |
| contig00009 | 46282 | 47457 | oqxA_1 | 0/0 | 100.0 | 93.8 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00009 | 47481 | 50633 | oqxB_1 | 0/0 | 100.0 | 95.6 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00056 | 8319 | 8975 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00319 | 28 | 843 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00056 | 19730 | 20533 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00056 | 18894 | 19730 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00056 | 13616 | 14491 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00138 | 10722 | 11141 | FosA6 | 0/0 | 100.0 | 92.9 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00239 | 2128 | 2457 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 92.7 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00057 | 1108 | 2232 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 92.4 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00039 | 3129 | 4322 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 95.1 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00279 | 1150 | 2009 | OKP-B-5 | 0/0 | 99.9 | 99.8 | AM850918:24-885 | OKP-B-5 is a beta-lactamase found in Klebsiella pneumoniae | cephalosporin, penam |
| contig00056 | 8319 | 8975 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00056 | 17313 | 18173 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00499 | 91 | 732 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00483 | 183 | 665 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00009 | 46282 | 47457 | oqxA | 0/0 | 100.0 | 93.8 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00009 | 47481 | 50633 | oqxB | 0/0 | 100.0 | 95.6 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00319 | 28 | 843 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00056 | 19730 | 20533 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00056 | 18894 | 19730 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00134 | 5212 | 6372 | (Bla)ampH | 0/0 | 100.0 | 96.0 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00056 | 13616 | 14491 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00279 | 1150 | 2009 | (Bla)blaOKP-B-5 | 0/0 | 99.9 | 99.8 | AY512506:68-928 | (Bla)blaOKP-B-5 | NA |
| contig00056 | 17313 | 18173 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00138 | 10722 | 11141 | (Fcyn)FosA6 | 0/0 | 100.0 | 92.9 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00009 | 46282 | 47457 | (Flq)OqxA | 0/0 | 100.0 | 93.8 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00009 | 47481 | 50633 | (Flq)OqxBgb | 0/0 | 100.0 | 95.6 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00056 | 8319 | 8975 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00499 | 91 | 732 | (Phe)catA2 | 0/0 | 100.0 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00319 | 28 | 843 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00483 | 183 | 656 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00056 | 19730 | 20557 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00056 | 18894 | 19730 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00056 | 13616 | 14491 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00279 | 1149 | 2009 | blaOKP-B-45 | 0/0 | 100 | 99.9 | NG_067154.1 | class A broad-spectrum beta-lactamase OKP-B-45 | BETA-LACTAM |
| contig00056 | 17313 | 18173 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00499 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00483 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00138 | 10722 | 11141 | fosA_gen | 0/0 | 100 | 93.3 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00009 | 46282 | 47457 | oqxA10 | 0/0 | 100 | 94.0 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00009 | 47481 | 50633 | oqxB11 | 0/0 | 100 | 96.2 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00056 | 8319 | 8975 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00319 | 28 | 843 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00056 | 19730 | 20557 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00056 | 18894 | 19730 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00056 | 13616 | 14491 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00279 | 1149 | 2009 | blaOKP-B-45 | 0/0 | 100 | 99.9 | NG_067154.1 | class A broad-spectrum beta-lactamase OKP-B-45 | BETA-LACTAM |
| contig00056 | 17313 | 18173 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00499 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00483 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00138 | 10722 | 11141 | fosA_gen | 0/0 | 100 | 93.3 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00009 | 46282 | 47457 | oqxA10 | 0/0 | 100 | 94.0 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00009 | 47481 | 50633 | oqxB11 | 0/0 | 100 | 96.2 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00056 | 8319 | 8975 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00319 | 28 | 843 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00388 | 637 | 1425 | aadA5_1 | 0/0 | 100 | 100.0 | AF137361 | aadA5 | Streptomycin |
| contig00283 | 2507 | 3310 | aph(3’’)-Ib_5 | 0/0 | 100 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00283 | 1671 | 2507 | aph(6)-Id_1 | 0/0 | 100 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00027 | 8277 | 9152 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00027 | 4595 | 5455 | blaTEM-1C_1 | 0/0 | 100 | 100.0 | FJ560503 | blaTEM-1C | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00833 | 91 | 732 | catA2_1 | 0/0 | 100 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00388 | 1556 | 2029 | dfrA17_1 | 0/0 | 100 | 100.0 | FJ460238 | dfrA17 | Trimethoprim |
| contig00027 | 2461 | 3117 | qnrS1_1 | 0/0 | 100 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00283 | 2507 | 3310 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00283 | 1671 | 2507 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00027 | 8277 | 9152 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00200 | 1127 | 1489 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 91.7 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00200 | 811 | 1140 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 94.8 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00492 | 440 | 1564 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 95.8 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00038 | 3126 | 4319 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 94.7 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00027 | 2461 | 3117 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00004 | 27313 | 27837 | SAT-1 | 0/0 | 100.0 | 100.0 | AB211124:0-525 | SAT-2 is a plasmid-mediated streptothricin acetyltransferase which confers resistance to streptothricin a nucleoside antibiotic. Originally described from an E. coli plasmid sequence by Heim et al. 1989. | nucleoside |
| contig00027 | 4595 | 5455 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00388 | 637 | 1425 | aadA5 | 0/0 | 100.0 | 100.0 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| contig00833 | 91 | 732 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00388 | 1556 | 2029 | dfrA17 | 0/0 | 100.0 | 100.0 | DQ838665:0-474 | dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00004 | 26467 | 27266 | (AGly)aadA1-pm | 1/3 | 96.3 | 99.5 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00388 | 637 | 1425 | (AGly)aadA5 | 0/0 | 100.0 | 100.0 | AF137361:64-852 | (AGly)aadA5 | NA |
| contig00004 | 27313 | 27837 | (AGly)sat-2A | 0/0 | 100.0 | 100.0 | X51546:518-1042 | (AGly)sat-2A | NA |
| contig00283 | 2507 | 3310 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00283 | 1671 | 2507 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00027 | 8277 | 9152 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00027 | 4595 | 5455 | (Bla)blaTEM-135 | 0/0 | 100.0 | 99.9 | JQ060998:1-861 | (Bla)blaTEM-135 | NA |
| contig00027 | 2461 | 3117 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00833 | 91 | 732 | (Phe)catA2 | 0/0 | 100.0 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00388 | 1556 | 2029 | (Tmt)dfrA17 | 0/0 | 100.0 | 100.0 | AB126604:98-571 | (Tmt)dfrA17 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00004 | 26467 | 27255 | aadA1 | 0/0 | 100 | 100.0 | NG_047327.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00388 | 637 | 1425 | aadA5 | 0/0 | 100 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig00283 | 2507 | 3334 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00283 | 1671 | 2507 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00027 | 8277 | 9152 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00027 | 4595 | 5455 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00833 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00388 | 1556 | 2029 | dfrA17 | 0/0 | 100 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig00027 | 2461 | 3117 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00004 | 27313 | 27837 | sat2_gen | 0/0 | 100 | 100.0 | NG_048068.1 | streptothricin N-acetyltransferase Sat2 | STREPTOTHRICIN |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00004 | 26467 | 27255 | aadA1 | 0/0 | 100 | 100.0 | NG_047327.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00388 | 637 | 1425 | aadA5 | 0/0 | 100 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig00283 | 2507 | 3334 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00283 | 1671 | 2507 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00027 | 8277 | 9152 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00027 | 4595 | 5455 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00833 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00388 | 1556 | 2029 | dfrA17 | 0/0 | 100 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig00027 | 2461 | 3117 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00004 | 27313 | 27837 | sat2_gen | 0/0 | 100 | 100.0 | NG_048068.1 | streptothricin N-acetyltransferase Sat2 | STREPTOTHRICIN |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00241 | 2933 | 3425 | ARR-3_4 | 0/0 | 90.8 | 99.2 | FM207631 | ARR-3 | |
| contig00145 | 2118 | 2978 | aac(3)-IIa_1 | 0/0 | 100.0 | 100.0 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00241 | 3482 | 4081 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00241 | 1301 | 2146 | aadA16_1 | 0/0 | 100.0 | 99.6 | EU675686 | aadA16 | Streptomycin |
| contig00466 | 117 | 920 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 99.9 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00274 | 1685 | 2560 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00145 | 1116 | 1976 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00241 | 2327 | 2800 | dfrA27_1 | 0/0 | 100.0 | 100.0 | FJ459817 | dfrA27 | Trimethoprim |
| contig00283 | 4954 | 5373 | fosA6_1 | 0/0 | 97.0 | 98.8 | KU254579 | fosA6 | Fosfomycin |
| contig00094 | 6725 | 7900 | oqxA_1 | 0/0 | 100.0 | 99.3 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00094 | 3549 | 6701 | oqxB_1 | 0/0 | 100.0 | 98.8 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00339 | 192 | 836 | qnrB6_2 | 0/0 | 100.0 | 100.0 | EF523819 | qnrB6 | Ciprofloxacin |
| contig00241 | 4 | 870 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00466 | 981 | 1796 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00375 | 1639 | 2823 | tet(D)_1 | 0/0 | 100.0 | 100.0 | AF467077 | tet(D) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 2118 | 2978 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00241 | 3482 | 4081 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00466 | 117 | 920 | APH(3’’)-Ib | 0/0 | 100.0 | 99.6 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00274 | 1685 | 2560 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00283 | 4954 | 5373 | FosA6 | 0/0 | 100.0 | 98.8 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00153 | 6542 | 6904 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.2 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00153 | 6226 | 6555 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 99.4 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00204 | 3151 | 4323 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 98.9 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00190 | 1064 | 2218 | Klebsiella_pneumoniae_OmpK37 | 7/32 | 99.9 | 95.3 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00144 | 3142 | 4335 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.7 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00339 | 156 | 836 | QnrB17 | 0/0 | 100.0 | 99.8 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00145 | 1116 | 1976 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00241 | 1301 | 2146 | aadA16 | 0/0 | 100.0 | 99.6 | EU675686:3196-4042 | aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae | aminoglycoside |
| contig00241 | 2933 | 3385 | arr-3 | 0/0 | 100.0 | 100.0 | EU675686:1956-2409 | arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis | rifamycin |
| contig00241 | 2327 | 2800 | dfrA27 | 0/0 | 100.0 | 100.0 | KP076293.1:2347-2821 | A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae | diaminopyrimidine |
| contig00094 | 6725 | 7900 | oqxA | 0/0 | 100.0 | 99.3 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00094 | 3549 | 6701 | oqxB | 0/0 | 100.0 | 98.8 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00241 | 4 | 843 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00466 | 981 | 1796 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00375 | 1639 | 2823 | tet(D) | 0/0 | 100.0 | 100.0 | AF467077.1:163-1348 | TetD is a tetracycline efflux pump found exclusively in Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 2118 | 2978 | (AGly)aac3-IIa | 0/0 | 100 | 100.0 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00241 | 1301 | 2146 | (AGly)aadA16 | 0/0 | 100 | 99.6 | EU675686:3197-4042 | (AGly)aadA16 | NA |
| contig00466 | 117 | 920 | (AGly)strA | 0/0 | 100 | 99.8 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00077 | 11421 | 12581 | (Bla)ampH | 0/0 | 100 | 99.0 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00274 | 1685 | 2560 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00145 | 1116 | 1976 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00283 | 4954 | 5373 | (Fcyn)FosA6 | 0/0 | 100 | 98.8 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00094 | 6725 | 7900 | (Flq)OqxA | 0/0 | 100 | 99.3 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00094 | 3549 | 6701 | (Flq)OqxBgb | 0/0 | 100 | 98.8 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00339 | 156 | 836 | (Flq)qnrB17 | 0/0 | 100 | 99.8 | AM919398:1-681 | (Flq)qnrB17 | NA |
| contig00241 | 2933 | 3385 | (Rif)arr3 | 0/0 | 100 | 100.0 | JF806499:1353-1805 | (Rif)arr3 | NA |
| contig00241 | 4 | 843 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00466 | 981 | 1796 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00375 | 1639 | 2823 | (Tet)tetD | 0/0 | 100 | 100.0 | AB089602:1521-2705 | (Tet)tetD | NA |
| contig00241 | 2327 | 2800 | (Tmt)dfrA27 | 0/0 | 100 | 100.0 | EU675686:2543-3016 | (Tmt)dfrA27 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 2118 | 2978 | aac(3)-IIe | 0/0 | 100 | 100.0 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00241 | 3482 | 4036 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00241 | 1301 | 2146 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00466 | 117 | 944 | aph(3’’)-Ib | 0/0 | 100 | 99.9 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00241 | 2933 | 3385 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00274 | 1685 | 2560 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00145 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00241 | 2327 | 2800 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00283 | 4954 | 5373 | fosA6 | 0/0 | 100 | 98.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00094 | 6725 | 7900 | oqxA6 | 0/0 | 100 | 99.7 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00094 | 3549 | 6701 | oqxB20 | 0/0 | 100 | 99.3 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00339 | 192 | 836 | qnrB6 | 0/0 | 100 | 99.8 | NG_050523.1 | quinolone resistance pentapeptide repeat protein QnrB6 | QUINOLONE |
| contig00241 | 4 | 843 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00466 | 981 | 1796 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00375 | 1639 | 2823 | tet(D) | 0/0 | 100 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 2118 | 2978 | aac(3)-IIe | 0/0 | 100 | 100.0 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00241 | 3482 | 4036 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00241 | 1301 | 2146 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00466 | 117 | 944 | aph(3’’)-Ib | 0/0 | 100 | 99.9 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00241 | 2933 | 3385 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00274 | 1685 | 2560 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00145 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00241 | 2327 | 2800 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00283 | 4954 | 5373 | fosA6 | 0/0 | 100 | 98.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00094 | 6725 | 7900 | oqxA6 | 0/0 | 100 | 99.7 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00094 | 3549 | 6701 | oqxB20 | 0/0 | 100 | 99.3 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00339 | 192 | 836 | qnrB6 | 0/0 | 100 | 99.8 | NG_050523.1 | quinolone resistance pentapeptide repeat protein QnrB6 | QUINOLONE |
| contig00241 | 4 | 843 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00466 | 981 | 1796 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00375 | 1639 | 2823 | tet(D) | 0/0 | 100 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00186 | 3533 | 4336 | aph(3’’)-Ib_5 | 0/0 | 100 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00186 | 2697 | 3533 | aph(6)-Id_1 | 0/0 | 100 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00305 | 1685 | 2560 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00269 | 3466 | 4332 | blaSHV-187_1 | 0/0 | 100 | 99.3 | LN515533 | blaSHV-187 | |
| contig00186 | 1116 | 1976 | blaTEM-1B_1 | 0/0 | 100 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00231 | 183 | 665 | dfrA14_5 | 0/0 | 100 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00150 | 10649 | 11068 | fosA6_1 | 0/0 | 97 | 98.3 | KU254579 | fosA6 | Fosfomycin |
| contig00074 | 6210 | 7385 | oqxA_1 | 0/0 | 100 | 99.4 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00074 | 3034 | 6186 | oqxB_1 | 0/0 | 100 | 99.0 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00110 | 2703 | 3359 | qnrS1_1 | 0/0 | 100 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00186 | 4397 | 5212 | sul2_2 | 0/0 | 100 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00186 | 3533 | 4336 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00186 | 2697 | 3533 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00305 | 1685 | 2560 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00150 | 10649 | 11068 | FosA6 | 0/0 | 100.0 | 98.3 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00082 | 14931 | 15293 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 100.0 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00082 | 14615 | 14944 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 99.4 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00190 | 4003 | 5175 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00299 | 365 | 1489 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 99.2 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00035 | 3135 | 4328 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.8 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00110 | 2703 | 3359 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00269 | 3466 | 4332 | SHV-187 | 0/0 | 100.0 | 99.3 | LN515533:0-867 | From the Lahey list of beta-lactamases. | carbapenem, cephalosporin, penam |
| contig00186 | 1116 | 1976 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00231 | 183 | 665 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00074 | 6210 | 7385 | oqxA | 0/0 | 100.0 | 99.4 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00074 | 3034 | 6186 | oqxB | 0/0 | 100.0 | 99.0 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00186 | 4397 | 5212 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00186 | 3533 | 4336 | (AGly)strA | 0/0 | 100 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00186 | 2697 | 3533 | (AGly)strB | 0/0 | 100 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00096 | 11380 | 12540 | (Bla)ampH | 0/0 | 100 | 99.2 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00305 | 1685 | 2560 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00269 | 3466 | 4332 | (Bla)blaSHV-187 | 0/0 | 100 | 99.3 | LN515533:1-867 | (Bla)blaSHV-187 | NA |
| contig00186 | 1116 | 1976 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00150 | 10649 | 11068 | (Fcyn)FosA6 | 0/0 | 100 | 98.3 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00074 | 6210 | 7385 | (Flq)OqxA | 0/0 | 100 | 99.4 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00074 | 3034 | 6186 | (Flq)OqxBgb | 0/0 | 100 | 99.0 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00110 | 2703 | 3359 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00186 | 4397 | 5212 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00231 | 183 | 656 | (Tmt)dfrA14 | 0/0 | 100 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00186 | 3533 | 4360 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00186 | 2697 | 3533 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00305 | 1685 | 2560 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00269 | 3472 | 4332 | blaSHV-215 | 0/0 | 100 | 99.8 | NG_062287.1 | class A beta-lactamase SHV-215 | BETA-LACTAM |
| contig00186 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00231 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00150 | 10649 | 11068 | fosA6 | 0/0 | 100 | 98.3 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00074 | 6210 | 7385 | oqxA6 | 0/0 | 100 | 99.8 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00074 | 3034 | 6186 | oqxB19 | 0/0 | 100 | 99.3 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00110 | 2703 | 3359 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00186 | 4397 | 5212 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00186 | 3533 | 4360 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00186 | 2697 | 3533 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00305 | 1685 | 2560 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00269 | 3472 | 4332 | blaSHV-215 | 0/0 | 100 | 99.8 | NG_062287.1 | class A beta-lactamase SHV-215 | BETA-LACTAM |
| contig00186 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00231 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00150 | 10649 | 11068 | fosA6 | 0/0 | 100 | 98.3 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00074 | 6210 | 7385 | oqxA6 | 0/0 | 100 | 99.8 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00074 | 3034 | 6186 | oqxB19 | 0/0 | 100 | 99.3 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00110 | 2703 | 3359 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00186 | 4397 | 5212 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00138 | 8835 | 9327 | ARR-3_4 | 0/0 | 90.8 | 99.2 | FM207631 | ARR-3 | |
| contig00297 | 1604 | 2464 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00138 | 9384 | 9983 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00138 | 7203 | 8048 | aadA16_1 | 0/0 | 100.0 | 99.6 | EU675686 | aadA16 | Streptomycin |
| contig00126 | 3533 | 4336 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 99.9 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00126 | 2697 | 3533 | aph(6)-Id_1 | 0/0 | 100.0 | 99.9 | M28829 | aph(6)-Id | Streptomycin |
| contig00287 | 1684 | 2559 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00169 | 7349 | 8209 | blaSHV-106_1 | 0/0 | 100.0 | 99.9 | AM922307 | blaSHV-106 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00126 | 1116 | 1976 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00138 | 8229 | 8702 | dfrA27_1 | 0/0 | 100.0 | 100.0 | FJ459817 | dfrA27 | Trimethoprim |
| contig00145 | 358 | 777 | fosA6_1 | 0/0 | 97.0 | 99.8 | KU254579 | fosA6 | Fosfomycin |
| contig00080 | 7093 | 8268 | oqxA_1 | 0/0 | 100.0 | 98.9 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00080 | 3917 | 7069 | oqxB_1 | 0/0 | 100.0 | 98.6 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00138 | 5906 | 6772 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00126 | 4397 | 5212 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00297 | 1604 | 2464 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00138 | 9384 | 9983 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00126 | 3533 | 4336 | APH(3’’)-Ib | 0/0 | 100.0 | 99.6 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00126 | 2697 | 3533 | APH(6)-Id | 0/0 | 100.0 | 99.8 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00287 | 1684 | 2559 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00145 | 358 | 777 | FosA6 | 0/0 | 100.0 | 99.8 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00032 | 37654 | 38016 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.5 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00032 | 37338 | 37667 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 100.0 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00172 | 4039 | 5211 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00088 | 1017 | 2171 | Klebsiella_pneumoniae_OmpK37 | 7/32 | 99.9 | 95.4 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00058 | 3135 | 4328 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.9 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00169 | 7349 | 8209 | SHV-106 | 0/0 | 100.0 | 99.9 | AM941847:0-861 | SHV-106 is an extended-spectrum beta-lactamase that has been found in clinical isolates. | carbapenem, cephalosporin, penam |
| contig00126 | 1116 | 1976 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00138 | 7203 | 8048 | aadA16 | 0/0 | 100.0 | 99.6 | EU675686:3196-4042 | aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae | aminoglycoside |
| contig00138 | 8835 | 9287 | arr-3 | 0/0 | 100.0 | 100.0 | EU675686:1956-2409 | arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis | rifamycin |
| contig00138 | 8229 | 8702 | dfrA27 | 0/0 | 100.0 | 100.0 | KP076293.1:2347-2821 | A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae | diaminopyrimidine |
| contig00080 | 7093 | 8268 | oqxA | 0/0 | 100.0 | 98.9 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00080 | 3917 | 7069 | oqxB | 0/0 | 100.0 | 98.6 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00138 | 5906 | 6745 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00126 | 4397 | 5212 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00297 | 1604 | 2464 | (AGly)aac3-IIa | 0/0 | 100 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00138 | 7203 | 8048 | (AGly)aadA16 | 0/0 | 100 | 99.6 | EU675686:3197-4042 | (AGly)aadA16 | NA |
| contig00126 | 3533 | 4336 | (AGly)strA | 0/0 | 100 | 99.8 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00126 | 2697 | 3533 | (AGly)strB | 0/0 | 100 | 99.9 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00091 | 11409 | 12569 | (Bla)ampH | 0/0 | 100 | 99.1 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00287 | 1684 | 2559 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00169 | 7349 | 8209 | (Bla)blaSHV-106 | 0/0 | 100 | 99.9 | AM941847:1-861 | (Bla)blaSHV-106 | NA |
| contig00126 | 1116 | 1976 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00145 | 358 | 777 | (Fcyn)FosA6 | 0/0 | 100 | 99.8 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00080 | 7093 | 8268 | (Flq)OqxA | 0/0 | 100 | 98.9 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00080 | 3917 | 7069 | (Flq)OqxBgb | 0/0 | 100 | 98.6 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00138 | 8835 | 9287 | (Rif)arr3 | 0/0 | 100 | 100.0 | JF806499:1353-1805 | (Rif)arr3 | NA |
| contig00138 | 5906 | 6745 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00126 | 4397 | 5212 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00138 | 8229 | 8702 | (Tmt)dfrA27 | 0/0 | 100 | 100.0 | EU675686:2543-3016 | (Tmt)dfrA27 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00297 | 1604 | 2464 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00138 | 9384 | 9938 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00138 | 7203 | 8048 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00126 | 3533 | 4360 | aph(3’’)-Ib | 0/0 | 100 | 99.9 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00126 | 2697 | 3533 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047466.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00138 | 8835 | 9287 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00287 | 1684 | 2559 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00169 | 7349 | 8209 | blaSHV-106 | 0/0 | 100 | 99.9 | NG_049996.1 | class A extended-spectrum beta-lactamase SHV-106 | CEPHALOSPORIN |
| contig00126 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00138 | 8229 | 8702 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00145 | 358 | 777 | fosA6 | 0/0 | 100 | 99.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00080 | 7093 | 8268 | oqxA5 | 0/0 | 100 | 99.4 | NG_050423.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA5 | PHENICOL, QUINOLONE |
| contig00080 | 3917 | 7069 | oqxB19 | 0/0 | 100 | 99.4 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00138 | 5906 | 6745 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00126 | 4397 | 5212 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00297 | 1604 | 2464 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00138 | 9384 | 9938 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00138 | 7203 | 8048 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00126 | 3533 | 4360 | aph(3’’)-Ib | 0/0 | 100 | 99.9 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00126 | 2697 | 3533 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047466.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00138 | 8835 | 9287 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00287 | 1684 | 2559 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00169 | 7349 | 8209 | blaSHV-106 | 0/0 | 100 | 99.9 | NG_049996.1 | class A extended-spectrum beta-lactamase SHV-106 | CEPHALOSPORIN |
| contig00126 | 1116 | 1976 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00138 | 8229 | 8702 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00145 | 358 | 777 | fosA6 | 0/0 | 100 | 99.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00080 | 7093 | 8268 | oqxA5 | 0/0 | 100 | 99.4 | NG_050423.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA5 | PHENICOL, QUINOLONE |
| contig00080 | 3917 | 7069 | oqxB19 | 0/0 | 100 | 99.4 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00138 | 5906 | 6745 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00126 | 4397 | 5212 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00175 | 6609 | 7101 | ARR-3_4 | 0/0 | 90.8 | 99.2 | FM207631 | ARR-3 | |
| contig00175 | 7158 | 7757 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00175 | 4977 | 5822 | aadA16_1 | 0/0 | 100.0 | 99.6 | EU675686 | aadA16 | Streptomycin |
| contig00062 | 5268 | 6143 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00252 | 3948 | 4814 | blaSHV-187_1 | 0/0 | 100.0 | 100.0 | LN515533 | blaSHV-187 | |
| contig00062 | 1586 | 2446 | blaTEM-1C_1 | 0/0 | 100.0 | 100.0 | FJ560503 | blaTEM-1C | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00428 | 91 | 732 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00175 | 6003 | 6476 | dfrA27_1 | 0/0 | 100.0 | 100.0 | FJ459817 | dfrA27 | Trimethoprim |
| contig00143 | 103 | 522 | fosA_3 | 0/0 | 100.0 | 98.8 | ACWO01000079 | fosA | Fosfomycin |
| contig00463 | 69 | 990 | mph(A)_2 | 1/1 | 100.0 | 99.7 | U36578 | mph(A) | Erythromycin, Azithromycin, Spiramycin, Telithromycin |
| contig00017 | 40852 | 42027 | oqxA_1 | 0/0 | 100.0 | 99.9 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00017 | 42051 | 45203 | oqxB_1 | 0/0 | 100.0 | 99.1 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00062 | 10784 | 11440 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00175 | 3680 | 4546 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00312 | 2492 | 3738 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00175 | 7158 | 7757 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00062 | 5268 | 6143 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00143 | 103 | 522 | FosA6 | 0/0 | 100.0 | 98.1 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00088 | 14940 | 15302 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.5 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00088 | 14624 | 14953 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 100.0 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00195 | 4031 | 5203 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00141 | 1008 | 2132 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 99.1 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00002 | 5674 | 6867 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.8 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00062 | 10784 | 11440 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00252 | 3948 | 4814 | SHV-187 | 0/0 | 100.0 | 100.0 | LN515533:0-867 | From the Lahey list of beta-lactamases. | carbapenem, cephalosporin, penam |
| contig00062 | 1586 | 2446 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00175 | 4977 | 5822 | aadA16 | 0/0 | 100.0 | 99.6 | EU675686:3196-4042 | aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae | aminoglycoside |
| contig00175 | 6609 | 7061 | arr-3 | 0/0 | 100.0 | 100.0 | EU675686:1956-2409 | arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis | rifamycin |
| contig00428 | 91 | 732 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00175 | 6003 | 6476 | dfrA27 | 0/0 | 100.0 | 100.0 | KP076293.1:2347-2821 | A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae | diaminopyrimidine |
| contig00463 | 69 | 974 | mphA | 0/0 | 100.0 | 100.0 | D16251.1:2531-1625 | The mphA gene encodes for resistance enzyme MPH(2’)-I which preferentially inactivate 14-membered macrolides (e.g.erythromycin telithromycin roxithromycin) over 16-membered macrolides (e.g.tylosin spiramycin). It phosphorylates macrolides at 2’-OH hydroxyl of desosamine sugar of macrolides in a GTP-dependent manner. | macrolide |
| contig00017 | 40852 | 42027 | oqxA | 0/0 | 100.0 | 99.9 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00017 | 42051 | 45203 | oqxB | 0/0 | 100.0 | 99.1 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00175 | 3680 | 4519 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00312 | 2492 | 3738 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00175 | 4977 | 5822 | (AGly)aadA16 | 0/0 | 100 | 99.6 | EU675686:3197-4042 | (AGly)aadA16 | NA |
| contig00078 | 11418 | 12578 | (Bla)ampH | 0/0 | 100 | 99.0 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00062 | 5268 | 6143 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00252 | 3948 | 4814 | (Bla)blaSHV-187 | 0/0 | 100 | 100.0 | LN515533:1-867 | (Bla)blaSHV-187 | NA |
| contig00062 | 1586 | 2446 | (Bla)blaTEM-135 | 0/0 | 100 | 99.9 | JQ060998:1-861 | (Bla)blaTEM-135 | NA |
| contig00143 | 103 | 522 | (Fcyn)FosA6 | 0/0 | 100 | 98.1 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00017 | 40852 | 42027 | (Flq)OqxA | 0/0 | 100 | 99.9 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00017 | 42051 | 45203 | (Flq)OqxBgb | 0/0 | 100 | 99.1 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00062 | 10784 | 11440 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00463 | 69 | 974 | (MLS)mph(A) | 0/0 | 100 | 100.0 | DQ445270:1626-2531 | (MLS)mph(A) | NA |
| contig00428 | 91 | 732 | (Phe)catA2 | 0/0 | 100 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00175 | 6609 | 7061 | (Rif)arr3 | 0/0 | 100 | 100.0 | JF806499:1353-1805 | (Rif)arr3 | NA |
| contig00175 | 3680 | 4519 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00312 | 2464 | 3738 | (Tet)tetA | 0/0 | 100 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00175 | 6003 | 6476 | (Tmt)dfrA27 | 0/0 | 100 | 100.0 | EU675686:2543-3016 | (Tmt)dfrA27 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00175 | 7158 | 7712 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00175 | 4977 | 5822 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00175 | 6609 | 7061 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00062 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00252 | 3948 | 4814 | blaSHV-187 | 0/0 | 100 | 100.0 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00062 | 1586 | 2446 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00428 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00175 | 6003 | 6476 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00143 | 103 | 522 | fosA_gen | 0/0 | 100 | 98.8 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00463 | 69 | 990 | mph(A) | 1/1 | 100 | 99.7 | NG_047986.1 | Mph(A) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00017 | 40852 | 42027 | oqxA | 0/0 | 100 | 99.9 | NG_048024.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA | PHENICOL, QUINOLONE |
| contig00017 | 42051 | 45203 | oqxB32 | 0/0 | 100 | 99.4 | NG_050452.1 | multidrug efflux RND transporter permease subunit OqxB32 | PHENICOL, QUINOLONE |
| contig00062 | 10784 | 11440 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00175 | 3680 | 4519 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00312 | 2464 | 3663 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00175 | 7158 | 7712 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00175 | 4977 | 5822 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00175 | 6609 | 7061 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00062 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00252 | 3948 | 4814 | blaSHV-187 | 0/0 | 100 | 100.0 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00062 | 1586 | 2446 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00428 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00175 | 6003 | 6476 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00143 | 103 | 522 | fosA_gen | 0/0 | 100 | 98.8 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00463 | 69 | 990 | mph(A) | 1/1 | 100 | 99.7 | NG_047986.1 | Mph(A) family macrolide 2’-phosphotransferase | MACROLIDE |
| contig00017 | 40852 | 42027 | oqxA | 0/0 | 100 | 99.9 | NG_048024.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA | PHENICOL, QUINOLONE |
| contig00017 | 42051 | 45203 | oqxB32 | 0/0 | 100 | 99.4 | NG_050452.1 | multidrug efflux RND transporter permease subunit OqxB32 | PHENICOL, QUINOLONE |
| contig00062 | 10784 | 11440 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00175 | 3680 | 4519 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00312 | 2464 | 3663 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 7920 | 8412 | ARR-3_4 | 0/0 | 90.8 | 99.2 | FM207631 | ARR-3 | |
| contig00145 | 8469 | 9068 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00145 | 6288 | 7133 | aadA16_1 | 0/0 | 100.0 | 99.6 | EU675686 | aadA16 | Streptomycin |
| contig00074 | 5268 | 6143 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00199 | 3257 | 4123 | blaSHV-187_1 | 0/0 | 100.0 | 99.4 | LN515533 | blaSHV-187 | |
| contig00074 | 1586 | 2446 | blaTEM-1C_1 | 0/0 | 100.0 | 100.0 | FJ560503 | blaTEM-1C | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00302 | 91 | 732 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00145 | 7314 | 7787 | dfrA27_1 | 0/0 | 100.0 | 100.0 | FJ459817 | dfrA27 | Trimethoprim |
| contig00130 | 549 | 968 | fosA5_1 | 0/0 | 100.0 | 98.3 | EU195449 | fosA5 | Fosfomycin |
| contig00010 | 21733 | 22908 | oqxA_1 | 0/0 | 100.0 | 99.7 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00010 | 18557 | 21709 | oqxB_1 | 0/0 | 100.0 | 98.8 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00074 | 10784 | 11440 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00145 | 4991 | 5857 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00233 | 2466 | 3712 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 8469 | 9068 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00074 | 5268 | 6143 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00130 | 549 | 968 | FosA5 | 0/0 | 100.0 | 98.3 | KP143090.1:1619-1199 | fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin | fosfomycin |
| contig00031 | 37705 | 38067 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.2 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00031 | 37389 | 37718 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 98.8 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00176 | 3979 | 5151 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.4 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00032 | 21480 | 22604 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 99.5 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00012 | 8284 | 9477 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.9 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00074 | 10784 | 11440 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00199 | 3257 | 4123 | SHV-187 | 0/0 | 100.0 | 99.4 | LN515533:0-867 | From the Lahey list of beta-lactamases. | carbapenem, cephalosporin, penam |
| contig00074 | 1586 | 2446 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00145 | 6288 | 7133 | aadA16 | 0/0 | 100.0 | 99.6 | EU675686:3196-4042 | aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae | aminoglycoside |
| contig00145 | 7920 | 8372 | arr-3 | 0/0 | 100.0 | 100.0 | EU675686:1956-2409 | arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis | rifamycin |
| contig00302 | 91 | 732 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00145 | 7314 | 7787 | dfrA27 | 0/0 | 100.0 | 100.0 | KP076293.1:2347-2821 | A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae | diaminopyrimidine |
| contig00010 | 21733 | 22908 | oqxA | 0/0 | 100.0 | 99.7 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00010 | 18557 | 21709 | oqxB | 0/0 | 100.0 | 98.8 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00145 | 4991 | 5830 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00233 | 2466 | 3712 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 6288 | 7133 | (AGly)aadA16 | 0/0 | 100 | 99.6 | EU675686:3197-4042 | (AGly)aadA16 | NA |
| contig00050 | 18622 | 19782 | (Bla)ampH | 0/0 | 100 | 99.2 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00074 | 5268 | 6143 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00199 | 3257 | 4123 | (Bla)blaSHV-187 | 0/0 | 100 | 99.4 | LN515533:1-867 | (Bla)blaSHV-187 | NA |
| contig00074 | 1586 | 2446 | (Bla)blaTEM-135 | 0/0 | 100 | 99.9 | JQ060998:1-861 | (Bla)blaTEM-135 | NA |
| contig00130 | 549 | 968 | (Fcyn)FosA5 | 0/0 | 100 | 98.3 | KP143090:1200-1619 | (Fcyn)FosA5 | NA |
| contig00010 | 21733 | 22908 | (Flq)OqxA | 0/0 | 100 | 99.7 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00010 | 18557 | 21709 | (Flq)OqxBgb | 0/0 | 100 | 98.8 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00074 | 10784 | 11440 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00302 | 91 | 732 | (Phe)catA2 | 0/0 | 100 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00145 | 7920 | 8372 | (Rif)arr3 | 0/0 | 100 | 100.0 | JF806499:1353-1805 | (Rif)arr3 | NA |
| contig00145 | 4991 | 5830 | (Sul)sul1 | 0/0 | 100 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00233 | 2438 | 3712 | (Tet)tetA | 0/0 | 100 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00233 | 3743 | 4393 | (Tet)tetR | 0/0 | 100 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00145 | 7314 | 7787 | (Tmt)dfrA27 | 0/0 | 100 | 100.0 | EU675686:2543-3016 | (Tmt)dfrA27 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 8469 | 9023 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00145 | 6288 | 7133 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00145 | 7920 | 8372 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00074 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00199 | 3257 | 4123 | blaSHV-187 | 0/0 | 100 | 99.4 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00074 | 1586 | 2446 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00302 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00145 | 7314 | 7787 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00130 | 549 | 968 | fosA5 | 0/0 | 100 | 98.3 | NG_050409.1 | fosfomycin resistance glutathione transferase FosA5 | FOSFOMYCIN |
| contig00010 | 21733 | 22908 | oqxA10 | 0/0 | 100 | 99.8 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00010 | 18557 | 21709 | oqxB17 | 0/0 | 100 | 99.6 | NG_050435.1 | multidrug efflux RND transporter permease subunit OqxB17 | PHENICOL, QUINOLONE |
| contig00074 | 10784 | 11440 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00145 | 4991 | 5830 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00233 | 2438 | 3637 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00145 | 8469 | 9023 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00145 | 6288 | 7133 | aadA16 | 0/0 | 100 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00145 | 7920 | 8372 | arr-3 | 0/0 | 100 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00074 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00199 | 3257 | 4123 | blaSHV-187 | 0/0 | 100 | 99.4 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00074 | 1586 | 2446 | blaTEM-235 | 0/0 | 100 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00302 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00145 | 7314 | 7787 | dfrA27 | 0/0 | 100 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00130 | 549 | 968 | fosA5 | 0/0 | 100 | 98.3 | NG_050409.1 | fosfomycin resistance glutathione transferase FosA5 | FOSFOMYCIN |
| contig00010 | 21733 | 22908 | oqxA10 | 0/0 | 100 | 99.8 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00010 | 18557 | 21709 | oqxB17 | 0/0 | 100 | 99.6 | NG_050435.1 | multidrug efflux RND transporter permease subunit OqxB17 | PHENICOL, QUINOLONE |
| contig00074 | 10784 | 11440 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00145 | 4991 | 5830 | sul1 | 0/0 | 100 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00233 | 2438 | 3637 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00153 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00158 | 1572 | 2171 | aac(6’)-Ib-cr_1 | 0/0 | 100 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00008 | 76098 | 77243 | blaACT-6_1 | 0/0 | 100 | 91.9 | FJ237366 | blaACT-6 | |
| contig00049 | 2637 | 3512 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00158 | 611 | 1441 | blaOXA-1_1 | 0/0 | 100 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00041 | 22259 | 23119 | blaTEM-1A_1 | 0/0 | 100 | 100.0 | HM749966 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00041 | 13923 | 14396 | dfrA15_2 | 0/0 | 100 | 100.0 | AF221900 | dfrA15 | Trimethoprim |
| contig00130 | 3188 | 3613 | fosA_1 | 0/0 | 100 | 96.0 | M85195 | fosA | Fosfomycin |
| contig00031 | 4402 | 5046 | qnrB1_1 | 0/0 | 100 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00041 | 11686 | 12552 | sul1_5 | 0/0 | 100 | 99.8 | EU780013 | sul1 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00153 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00158 | 1572 | 2171 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00008 | 76098 | 77243 | ACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:40-1186 | ACT-6 is a beta-lactamase found in Klebsiella pneumoniae | carbapenem, cephalosporin, cephamycin, penam |
| contig00049 | 2637 | 3512 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00019 | 65188 | 66381 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 94.0 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00130 | 3188 | 3613 | FosA2 | 0/0 | 100.0 | 91.8 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00158 | 611 | 1441 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00031 | 4366 | 5046 | QnrB17 | 0/0 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00041 | 22259 | 23119 | TEM-150 | 0/0 | 100.0 | 99.9 | AM183304:208-1069 | TEM-150 is a beta-lactamase found in Enterobacter spp. E. coli and Klebsiella pneumoniae. | cephalosporin, monobactam, penam, penem |
| contig00041 | 13923 | 14396 | dfrA15 | 0/0 | 100.0 | 100.0 | KF534911:39-513 | dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae | diaminopyrimidine |
| contig00091 | 1257 | 1608 | ramA | 0/0 | 93.9 | 90.9 | JQ727668:0-375 | RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00041 | 11686 | 12525 | sul1 | 0/0 | 100.0 | 99.9 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00153 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00041 | 13030 | 13831 | (AGly)aadA1-pm | 0/0 | 96.5 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00008 | 76098 | 77243 | (Bla)blaACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:41-1186 | (Bla)blaACT-6 | NA |
| contig00049 | 2637 | 3512 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00158 | 611 | 1441 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00041 | 22259 | 23119 | (Bla)blaTEM-150 | 0/0 | 100.0 | 99.9 | AM183304:209-1069 | (Bla)blaTEM-150 | NA |
| contig00130 | 3188 | 3613 | (Fcyn)FosA2 | 0/0 | 100.0 | 91.8 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00031 | 4366 | 5046 | (Flq)qnrB1 | 0/0 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00041 | 11686 | 12525 | (Sul)sul1 | 0/0 | 100.0 | 99.9 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00041 | 13923 | 14396 | (Tmt)dfrA15b | 0/0 | 100.0 | 99.2 | AJ867237:177-650 | (Tmt)dfrA15b | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00153 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00158 | 1572 | 2126 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00041 | 13030 | 13821 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00008 | 76098 | 77243 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00049 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00158 | 611 | 1441 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00041 | 22259 | 23119 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00041 | 13923 | 14396 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00130 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00031 | 4402 | 5046 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00041 | 11686 | 12525 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00153 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00158 | 1572 | 2126 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00041 | 13030 | 13821 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00008 | 76098 | 77243 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00049 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00158 | 611 | 1441 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00041 | 22259 | 23119 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00041 | 13923 | 14396 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00130 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00031 | 4402 | 5046 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00041 | 11686 | 12525 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00165 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00173 | 1540 | 2139 | aac(6’)-Ib-cr_1 | 0/0 | 100 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00005 | 75808 | 76953 | blaACT-6_1 | 0/0 | 100 | 91.9 | FJ237366 | blaACT-6 | |
| contig00031 | 2637 | 3512 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00173 | 579 | 1409 | blaOXA-1_1 | 0/0 | 100 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00046 | 15465 | 16325 | blaTEM-1A_1 | 0/0 | 100 | 100.0 | HM749966 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00046 | 7129 | 7602 | dfrA15_2 | 0/0 | 100 | 100.0 | AF221900 | dfrA15 | Trimethoprim |
| contig00141 | 3188 | 3613 | fosA_1 | 0/0 | 100 | 96.0 | M85195 | fosA | Fosfomycin |
| contig00088 | 4402 | 5046 | qnrB1_1 | 0/0 | 100 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00046 | 4892 | 5758 | sul1_5 | 0/0 | 100 | 99.8 | EU780013 | sul1 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00165 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00173 | 1540 | 2139 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00005 | 75808 | 76953 | ACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:40-1186 | ACT-6 is a beta-lactamase found in Klebsiella pneumoniae | carbapenem, cephalosporin, cephamycin, penam |
| contig00031 | 2637 | 3512 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00017 | 65197 | 66390 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 94.0 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00141 | 3188 | 3613 | FosA2 | 0/0 | 100.0 | 91.8 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00173 | 579 | 1409 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00088 | 4366 | 5046 | QnrB17 | 0/0 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00046 | 15465 | 16325 | TEM-150 | 0/0 | 100.0 | 99.9 | AM183304:208-1069 | TEM-150 is a beta-lactamase found in Enterobacter spp. E. coli and Klebsiella pneumoniae. | cephalosporin, monobactam, penam, penem |
| contig00046 | 7129 | 7602 | dfrA15 | 0/0 | 100.0 | 100.0 | KF534911:39-513 | dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae | diaminopyrimidine |
| contig00105 | 4154 | 4505 | ramA | 0/0 | 93.9 | 90.9 | JQ727668:0-375 | RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00046 | 4892 | 5731 | sul1 | 0/0 | 100.0 | 99.9 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00165 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00046 | 6236 | 7037 | (AGly)aadA1-pm | 0/0 | 96.5 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00005 | 75808 | 76953 | (Bla)blaACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:41-1186 | (Bla)blaACT-6 | NA |
| contig00031 | 2637 | 3512 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00173 | 579 | 1409 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00046 | 15465 | 16325 | (Bla)blaTEM-150 | 0/0 | 100.0 | 99.9 | AM183304:209-1069 | (Bla)blaTEM-150 | NA |
| contig00141 | 3188 | 3613 | (Fcyn)FosA2 | 0/0 | 100.0 | 91.8 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00088 | 4366 | 5046 | (Flq)qnrB1 | 0/0 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00046 | 4892 | 5731 | (Sul)sul1 | 0/0 | 100.0 | 99.9 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00046 | 7129 | 7602 | (Tmt)dfrA15b | 0/0 | 100.0 | 99.2 | AJ867237:177-650 | (Tmt)dfrA15b | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00165 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00173 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00046 | 6236 | 7027 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00005 | 75808 | 76953 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00031 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00173 | 579 | 1409 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00046 | 15465 | 16325 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00046 | 7129 | 7602 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00141 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00088 | 4402 | 5046 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00046 | 4892 | 5731 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00165 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00173 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00046 | 6236 | 7027 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00005 | 75808 | 76953 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00031 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00173 | 579 | 1409 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00046 | 15465 | 16325 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00046 | 7129 | 7602 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00141 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00088 | 4402 | 5046 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00046 | 4892 | 5731 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00648 | 136 | 996 | aac(3)-IId_1 | 0/0 | 100.0 | 99.9 | EU022314 | aac(3)-IId | Gentamicin, Tobramycin |
| contig01653 | 52 | 853 | aadA2_1 | 0/0 | 97.9 | 99.9 | NC_010870 | aadA2 | Streptomycin |
| contig00757 | 2711 | 3499 | aadA5_1 | 0/0 | 100.0 | 100.0 | AF137361 | aadA5 | Streptomycin |
| contig01238 | 1684 | 2548 | blaCTX-M-15_1 | 0/0 | 98.7 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00785 | 2019 | 2879 | blaLEN26_1 | 0/0 | 100.0 | 92.5 | JQ067123 | blaLEN26 | |
| contig01897 | 90 | 731 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig01653 | 1251 | 1747 | dfrA12_8 | 0/0 | 99.8 | 100.0 | AM040708 | dfrA12 | Trimethoprim |
| contig02251 | 568 | 1050 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00757 | 3630 | 4103 | dfrA17_1 | 0/0 | 100.0 | 100.0 | FJ460238 | dfrA17 | Trimethoprim |
| contig02125 | 41 | 550 | dfrA8_1 | 0/0 | 100.0 | 100.0 | U10186 | dfrA8 | Trimethoprim |
| contig00484 | 4869 | 5288 | fosA_6 | 0/0 | 100.0 | 94.0 | ACZD01000244 | fosA | Fosfomycin |
| contig00103 | 3280 | 4455 | oqxA_1 | 0/0 | 100.0 | 96.8 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00103 | 104 | 3256 | oqxB_1 | 0/0 | 100.0 | 97.7 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00765 | 178 | 834 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00757 | 1325 | 2191 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig02457 | 28 | 843 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00372 | 684 | 1868 | tet(D)_1 | 0/0 | 100.0 | 100.0 | AF467077 | tet(D) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00648 | 136 | 996 | AAC(3)-IId | 0/0 | 100.0 | 99.9 | EU022314.1:0-861 | AAC(3)-IId is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig01238 | 1684 | 2548 | CTX-M-15 | 0/0 | 98.7 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00149 | 6070 | 7263 | Escherichia_coli_acrA | 0/0 | 100.0 | 100.0 | U00096.3:485619-484425 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. coli. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00766 | 2681 | 3838 | Escherichia_coli_ampH | 0/0 | 100.0 | 100.0 | AP012030.1:396711-395553 | AmpH is a class C ampC-like beta-lactamase and penicillin-binding protein identified in Escherichia coli. | cephalosporin, penam |
| contig01561 | 717 | 1049 | Escherichia_coli_emrE | 0/0 | 100.0 | 91.9 | Z11877.1:485-818 | Member of the small MDR (multidrug resistance) family of transporters, in Escherichia coli this protein provides resistance against a number of positively charged compounds including ethidium bromide and erythromycin, proton-dependent secondary transporter which exchanges protons for compound translocation | macrolide |
| contig00484 | 4869 | 5288 | FosA5 | 0/0 | 100.0 | 91.9 | KP143090.1:1619-1199 | fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin | fosfomycin |
| contig01610 | 737 | 1150 | H-NS | 0/0 | 100.0 | 99.3 | BA000007.3:1738104-1737690 | H-NS is a histone-like protein involved in global gene regulation in Gram-negative bacteria. It is a repressor of the membrane fusion protein genes acrE mdtE and emrK as well as nearby genes of many RND-type multidrug exporters. | cephalosporin, cephamycin, fluoroquinolone, macrolide, penam, tetracycline |
| contig00925 | 928 | 1257 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 92.4 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00425 | 3967 | 5139 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 94.8 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig01858 | 1 | 1101 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 97.9 | 95.9 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00566 | 971 | 2164 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 91.5 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00785 | 2019 | 2879 | LEN-26 | 0/0 | 100.0 | 92.6 | JX124390.1:0-861 | LEN-26 is a beta-lactamase found in Escherichia coli and Klebsiella pneumoniae. | penam, penem |
| contig00765 | 178 | 834 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig01653 | 52 | 831 | aadA2 | 0/0 | 100.0 | 99.9 | AF156486:5012-5792 | aadA2 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in K. pneumoniae Salmonella spp. Corynebacterium glutamicum C. freundii and Aeromonas spp. | aminoglycoside |
| contig00757 | 2711 | 3499 | aadA5 | 0/0 | 100.0 | 100.0 | AF137361:63-852 | aadA5 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids transposons and integrons in E. coli K. pneumoniae Kluyvera georgiana P. aeruginosa and E. cloacae | aminoglycoside |
| contig00149 | 7286 | 10435 | acrB | 0/0 | 100.0 | 100.0 | U00096.3:484403-481253 | Protein subunit of AcrA-AcrB-TolC multidrug efflux complex. AcrB functions as a herterotrimer which forms the inner membrane component and is primarily responsible for substrate recognition and energy transduction by acting as a drug/proton antiporter. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00355 | 342 | 3455 | acrD | 0/0 | 100.0 | 100.0 | AP009048.1:2586250-2589364 | AcrD is an aminoglycoside efflux pump expressed in E. coli. Its expression can be induced by indole and is regulated by baeRS and cpxAR. | aminoglycoside |
| contig01972 | 1 | 1079 | acrE | 0/0 | 93.2 | 100.0 | U00096:3413863-3415021 | AcrE is a membrane fusion protein similar to AcrA. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig00808 | 69 | 3173 | acrF | 0/0 | 100.0 | 100.0 | U00096:3415032-3418137 | AcrF is a inner membrane transporter similar to AcrB. | cephalosporin, cephamycin, fluoroquinolone, penam |
| contig02824 | 1 | 660 | acrS | 0/0 | 99.5 | 100.0 | U00096:3413465-3412802 | AcrS is a repressor of the AcrAB efflux complex and is associated with the expression of AcrEF. AcrS is believed to regulate a switch between AcrAB and AcrEF efflux. | cephalosporin, cephamycin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig01220 | 527 | 1930 | baeS | 0/0 | 100.0 | 100.0 | AP009048:2165012-2166416 | BaeS is a sensor kinase in the BaeSR regulatory system. While it phosphorylates BaeR to increase its activity BaeS is not necessary for overexpressed BaeR to confer resistance. | aminocoumarin, aminoglycoside |
| contig01897 | 90 | 731 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00254 | 5044 | 6417 | cpxA | 0/0 | 100.0 | 99.0 | BA000007.3:4905062-4903688 | CpxA is a membrane-localized sensor kinase that is activated by envelope stress. It starts a kinase cascade that activates CpxR which promotes efflux complex expression. | aminocoumarin, aminoglycoside |
| contig01653 | 1251 | 1747 | dfrA12 | 0/0 | 99.8 | 100.0 | GU585907.1:22103-21605 | dfrA12 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae | diaminopyrimidine |
| contig02251 | 568 | 1050 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00757 | 3630 | 4103 | dfrA17 | 0/0 | 100.0 | 100.0 | DQ838665:0-474 | dfrA17 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig02125 | 41 | 550 | dfrA8 | 0/0 | 100.0 | 100.0 | KJ174469:710-1220 | dfrA8 is a transposon-encoded dihydrofolate reductase found in Salmonella enterica | diaminopyrimidine |
| contig00362 | 700 | 1872 | emrA | 0/0 | 100.0 | 100.0 | AP009048:2810082-2811255 | EmrA is a membrane fusion protein providing an efflux pathway with EmrB and TolC between the inner and outer membranes of E. coli a Gram-negative bacterium. | fluoroquinolone |
| contig00362 | 1889 | 3427 | emrB | 0/0 | 100.0 | 100.0 | U00096:2812615-2814154 | emrB is a translocase in the emrB -TolC efflux protein in E. coli. It recognizes substrates including carbonyl cyanide m-chlorophenylhydrazone (CCCP) nalidixic acid and thioloactomycin. | fluoroquinolone |
| contig00362 | 43 | 573 | emrR | 0/0 | 100.0 | 99.8 | U00096.3:2810769-2811300 | EmrR is a negative regulator for the EmrAB-TolC multidrug efflux pump in E. coli. Mutations lead to EmrAB-TolC overexpression. | fluoroquinolone |
| contig00960 | 1 | 1543 | eptA | 0/0 | 93.9 | 100.0 | AP009048:4340268-4338624 | PmrC mediates the modification of Lipid A by the addition of 4-amino-4-deoxy-L-arabinose (L-Ara4N) and phosphoethanolamine resulting in a less negative cell membrane and decreased binding of polymyxin B. | peptide |
| contig01774 | 38 | 652 | evgA | 0/0 | 100.0 | 100.0 | BA000007.3:3212025-3212640 | EvgA when phosphorylated is a positive regulator for efflux protein complexes emrKY and mdtEF. While usually phosphorylated in a EvgS dependent manner it can be phosphorylated in the absence of EvgS when overexpressed. | fluoroquinolone, macrolide, penam, tetracycline |
| contig01930 | 101 | 829 | gadW | 0/0 | 100.0 | 94.7 | CP015085.1:2552440-2551711 | GadW is an AraC-family regulator that promotes mdtEF expression to confer multidrug resistance. GadW inhibits GadX-dependent activation. GadW clearly represses gadX and in situations where GadX is missing activates gadA and gadBC. | fluoroquinolone, macrolide, penam |
| contig00421 | 5510 | 6187 | kdpE | 0/0 | 100.0 | 100.0 | U00096.3:721733-721055 | kdpE is a transcriptional activator that is part of the two-component system KdpD/KdpE that is studied for its regulatory role in potassium transport and has been identified as an adaptive regulator involved in the virulence and intracellular survival of pathogenic bacteria. kdpE regulates a range of virulence loci through direct promoter binding. | aminoglycoside |
| contig01620 | 1280 | 1663 | marA | 0/0 | 100.0 | 100.0 | AP009048.1:1621287-1621671 | In the presence of antibiotic stress E. coli overexpresses the global activator protein MarA which besides inducing MDR efflux pump AcrAB also down- regulates synthesis of the porin OmpF. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig01075 | 171 | 1418 | mdtA | 0/0 | 100.0 | 98.0 | U00096:2154015-2155263 | MdtA is the membrane fusion protein of the multidrug efflux complex mdtABC. | aminocoumarin |
| contig00698 | 470 | 1627 | mdtE | 0/0 | 100.0 | 100.0 | AP009048.1:3981183-3980025 | MdtE is the membrane fusion protein of the MdtEF multidrug efflux complex. It shares 70% sequence similarity with AcrA. | fluoroquinolone, macrolide, penam |
| contig00167 | 3448 | 4674 | mdtG | 0/0 | 100.0 | 99.3 | CP000800.1:1192954-1191727 | The MdtG protein also named YceE appears to be a member of the major facilitator superfamily of transporters and it has been reported when overexpressed to increase fosfomycin and deoxycholate resistances. mdtG is a member of the marA-soxS-rob regulon. | fosfomycin |
| contig00426 | 5161 | 6369 | mdtH | 0/0 | 100.0 | 100.0 | U00096:1125326-1124117 | Multidrug resistance protein MdtH | fluoroquinolone |
| contig00518 | 251 | 1462 | mdtM | 0/0 | 98.3 | 95.5 | U00096.3:4568519-4567286 | Multidrug resistance protein MdtM | acridine_dye, fluoroquinolone, lincosamide, nucleoside, phenicol |
| contig00310 | 6527 | 7558 | mdtN | 0/0 | 100.0 | 100.0 | AP009048.1:4307588-4306556 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride. | acridine_dye, nucleoside |
| contig00076 | 11060 | 12526 | mdtP | 0/0 | 100.0 | 100.0 | AP009048.1:4304509-4303042 | Multidrug resistance efflux pump. Could be involved in resistance to puromycin acriflavine and tetraphenylarsonium chloride | acridine_dye, nucleoside |
| contig00092 | 3886 | 4362 | mphB | 0/0 | 100.0 | 98.3 | AE005174.2:3397370-3397847 | The mphB gene encodes for MPH(2’)-II. This enzymes phosphorylates 14-membered and 16-membered macrolides. It phosphorylates macrolides in GTP- dependent manner at 2’-OH hydroxyl of desosamine sugar of macrolides. | macrolide |
| contig00388 | 1436 | 3184 | msbA | 0/0 | 100.0 | 100.0 | U00096.3:966620-968369 | MsbA is a multidrug resistance transporter homolog from E. coli and belongs to a superfamily of transporters that contain an adenosine triphosphate (ATP) binding cassette (ABC) which is also called a nucleotide-binding domain (NBD). MsbA is a member of the MDR-ABC transporter group by sequence homology. MsbA transports lipid A a major component of the bacterial outer cell membrane and is the only bacterial ABC transporter that is essential for cell viability. | nitroimidazole |
| contig00103 | 3280 | 4455 | oqxA | 0/0 | 100.0 | 96.8 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00103 | 104 | 3256 | oqxB | 0/0 | 100.0 | 97.7 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig01303 | 1350 | 2318 | pmrF | 0/0 | 100.0 | 100.0 | U00096:2367070-2368039 | PmrF is required for the synthesis and transfer of 4-amino-4-deoxy-L-arabinose (Ara4N) to Lipid A which allows gram-negative bacteria to resist the antimicrobial activity of cationic antimicrobial peptides and antibiotics such as polymyxin. pmrF corresponds to 1 locus in Pseudomonas aeruginosa PAO1 and 1 locus in Pseudomonas aeruginosa LESB58. | peptide |
| contig00757 | 1325 | 2164 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig02457 | 28 | 843 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00372 | 684 | 1868 | tet(D) | 0/0 | 100.0 | 100.0 | AF467077.1:163-1348 | TetD is a tetracycline efflux pump found exclusively in Gram-negative bacteria. | tetracycline |
| contig01792 | 146 | 1545 | tolC | 0/0 | 94.1 | 100.0 | FJ768952:0-1488 | TolC is a protein subunit of many multidrug efflux complexes in Gram negative bacteria. It is an outer membrane efflux protein and is constitutively open. Regulation of efflux activity is often at its periplasmic entrance by other components of the efflux complex. | aminocoumarin, aminoglycoside, carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, macrolide, penam, penem, peptide, phenicol, rifamycin, tetracycline, triclosan |
| contig00520 | 3845 | 5488 | yojI | 0/0 | 100.0 | 100.0 | U00096.3:2308615-2306971 | YojI mediates resistance to the peptide antibiotic microcin J25 when it is expressed from a multicopy vector. YojI is capable of pumping out microcin molecules. The outer membrane protein TolC in addition to YojI is required for export of microcin J25 out of the cell. Microcin J25 is thus the first known substrate for YojI. | peptide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00648 | 136 | 996 | (AGly)aac3-IId | 0/0 | 100.0 | 99.9 | EU022314:1-861 | (AGly)aac3-IId | NA |
| contig01653 | 52 | 831 | (AGly)aadA2 | 0/0 | 100.0 | 99.9 | X68227:66-945 | (AGly)aadA2 | NA |
| contig00757 | 2711 | 3499 | (AGly)aadA5 | 0/0 | 100.0 | 100.0 | AF137361:64-852 | (AGly)aadA5 | NA |
| contig00276 | 3885 | 5786 | (Bla)Penicillin_Binding_Protein_Ecoli | 0/0 | 100.0 | 100.0 | CP002291:664439-666340 | (Bla)Penicillin_Binding_Protein_Ecoli | NA |
| contig00100 | 7858 | 9018 | (Bla)ampH | 0/0 | 100.0 | 96.2 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00766 | 2681 | 3838 | (Bla)ampH_Ecoli | 0/0 | 100.0 | 100.0 | AP012030:395554-396711 | (Bla)ampH_Ecoli | NA |
| contig01238 | 1684 | 2548 | (Bla)blaCTX-M-15 | 0/0 | 98.7 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00785 | 1989 | 2879 | (Bla)blaLEN-24 | 0/0 | 100.0 | 91.2 | AM850914:31-891 | (Bla)blaLEN-24 | NA |
| contig00484 | 4869 | 5288 | (Fcyn)FosA5 | 0/0 | 100.0 | 91.9 | KP143090:1200-1619 | (Fcyn)FosA5 | NA |
| contig00103 | 3280 | 4455 | (Flq)OqxA | 0/0 | 100.0 | 96.8 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00103 | 104 | 3256 | (Flq)OqxBgb | 0/0 | 100.0 | 97.7 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00765 | 178 | 834 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig01897 | 90 | 731 | (Phe)catA2 | 0/0 | 100.0 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00757 | 1325 | 2164 | (Sul)sul1 | 0/0 | 100.0 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig02457 | 28 | 843 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00372 | 684 | 1868 | (Tet)tetD | 0/0 | 100.0 | 100.0 | AB089602:1521-2705 | (Tet)tetD | NA |
| contig01653 | 1251 | 1747 | (Tmt)dfrA12 | 0/0 | 99.8 | 100.0 | Z21672:310-807 | (Tmt)dfrA12 | NA |
| contig02251 | 568 | 1041 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| contig00757 | 3630 | 4103 | (Tmt)dfrA17 | 0/0 | 100.0 | 100.0 | AB126604:98-571 | (Tmt)dfrA17 | NA |
| contig02125 | 41 | 550 | (Tmt)dfrA8 | 0/0 | 100.0 | 100.0 | U10186:711-1220 | (Tmt)dfrA8 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00648 | 136 | 996 | aac(3)-IId | 0/0 | 100.0 | 100.0 | NG_047251.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | GENTAMICIN |
| contig01653 | 52 | 843 | aadA2 | 0/0 | 100.0 | 100.0 | NG_047343.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 | STREPTOMYCIN |
| contig00757 | 2711 | 3499 | aadA5 | 0/0 | 100.0 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig01238 | 1684 | 2548 | blaCTX-M-15 | 0/0 | 98.7 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00785 | 2019 | 2879 | blaOKP-D-1 | 0/0 | 100.0 | 99.5 | NG_067156.1 | class A broad-spectrum beta-lactamase OKP-D-1 | BETA-LACTAM |
| contig01897 | 90 | 731 | catA2 | 0/0 | 100.0 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig01653 | 1251 | 1747 | dfrA12 | 0/0 | 99.8 | 100.0 | NG_047689.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | TRIMETHOPRIM |
| contig02251 | 568 | 1041 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00757 | 3630 | 4103 | dfrA17 | 0/0 | 100.0 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig02125 | 41 | 550 | dfrA8 | 0/0 | 100.0 | 100.0 | NG_047741.1 | trimethoprim-resistant dihydrofolate reductase DfrA8 | TRIMETHOPRIM |
| contig00484 | 4869 | 5288 | fosA_gen | 0/0 | 100.0 | 94.0 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00103 | 3280 | 4455 | oqxA6 | 0/0 | 100.0 | 97.2 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00103 | 104 | 3256 | oqxB20 | 0/0 | 100.0 | 98.0 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00765 | 178 | 834 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00757 | 1325 | 2164 | sul1 | 0/0 | 100.0 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig02457 | 28 | 843 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00372 | 684 | 1868 | tet(D) | 0/0 | 100.0 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00648 | 136 | 996 | aac(3)-IId | 0/0 | 100.0 | 100.0 | NG_047251.1 | aminoglycoside N-acetyltransferase AAC(3)-IId | GENTAMICIN |
| contig01653 | 52 | 843 | aadA2 | 0/0 | 100.0 | 100.0 | NG_047343.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA2 | STREPTOMYCIN |
| contig00757 | 2711 | 3499 | aadA5 | 0/0 | 100.0 | 100.0 | NG_047357.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA5 | STREPTOMYCIN |
| contig01238 | 1684 | 2548 | blaCTX-M-15 | 0/0 | 98.7 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00785 | 2019 | 2879 | blaOKP-D-1 | 0/0 | 100.0 | 99.5 | NG_067156.1 | class A broad-spectrum beta-lactamase OKP-D-1 | BETA-LACTAM |
| contig01897 | 90 | 731 | catA2 | 0/0 | 100.0 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig01653 | 1251 | 1747 | dfrA12 | 0/0 | 99.8 | 100.0 | NG_047689.1 | trimethoprim-resistant dihydrofolate reductase DfrA12 | TRIMETHOPRIM |
| contig02251 | 568 | 1041 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00757 | 3630 | 4103 | dfrA17 | 0/0 | 100.0 | 99.8 | NG_047710.1 | trimethoprim-resistant dihydrofolate reductase DfrA17 | TRIMETHOPRIM |
| contig02125 | 41 | 550 | dfrA8 | 0/0 | 100.0 | 100.0 | NG_047741.1 | trimethoprim-resistant dihydrofolate reductase DfrA8 | TRIMETHOPRIM |
| contig00484 | 4869 | 5288 | fosA_gen | 0/0 | 100.0 | 94.0 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00103 | 3280 | 4455 | oqxA6 | 0/0 | 100.0 | 97.2 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00103 | 104 | 3256 | oqxB20 | 0/0 | 100.0 | 98.0 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00765 | 178 | 834 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00757 | 1325 | 2164 | sul1 | 0/0 | 100.0 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig02457 | 28 | 843 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00372 | 684 | 1868 | tet(D) | 0/0 | 100.0 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00067 | 16246 | 17049 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00067 | 15410 | 16246 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00067 | 10132 | 11007 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00270 | 3497 | 4363 | blaSHV-187_1 | 0/0 | 100.0 | 99.3 | LN515533 | blaSHV-187 | |
| contig00067 | 13829 | 14689 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00402 | 183 | 665 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00077 | 59 | 470 | fosA_3 | 0/0 | 98.1 | 100.0 | ACWO01000079 | fosA | Fosfomycin |
| contig00070 | 6209 | 7384 | oqxA_1 | 0/0 | 100.0 | 99.4 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00070 | 3033 | 6185 | oqxB_1 | 0/0 | 100.0 | 99.0 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00067 | 4835 | 5491 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00067 | 17110 | 17925 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00067 | 16246 | 17049 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00067 | 15410 | 16246 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00067 | 10132 | 11007 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00077 | 59 | 471 | FosA6 | 0/0 | 98.3 | 99.8 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00158 | 6554 | 6916 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 100.0 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00158 | 6238 | 6567 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 99.4 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00187 | 4027 | 5199 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00105 | 1856 | 2980 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 99.1 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00041 | 3170 | 4363 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.9 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00067 | 4835 | 5491 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00270 | 3497 | 4363 | SHV-187 | 0/0 | 100.0 | 99.3 | LN515533:0-867 | From the Lahey list of beta-lactamases. | carbapenem, cephalosporin, penam |
| contig00067 | 13829 | 14689 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00402 | 183 | 665 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00070 | 6209 | 7384 | oqxA | 0/0 | 100.0 | 99.4 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00070 | 3033 | 6185 | oqxB | 0/0 | 100.0 | 99.0 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00067 | 17110 | 17925 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00067 | 16246 | 17049 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00067 | 15410 | 16246 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00103 | 6711 | 7871 | (Bla)ampH | 0/0 | 100.0 | 99.2 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00067 | 10132 | 11007 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00270 | 3497 | 4363 | (Bla)blaSHV-187 | 0/0 | 100.0 | 99.3 | LN515533:1-867 | (Bla)blaSHV-187 | NA |
| contig00067 | 13829 | 14689 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00077 | 59 | 471 | (Fcyn)FosA6 | 0/0 | 98.3 | 99.8 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00070 | 6209 | 7384 | (Flq)OqxA | 0/0 | 100.0 | 99.4 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00070 | 3033 | 6185 | (Flq)OqxBgb | 0/0 | 100.0 | 99.0 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00067 | 4835 | 5491 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00067 | 17110 | 17925 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00402 | 183 | 656 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00067 | 16246 | 17073 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00067 | 15410 | 16246 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00067 | 10132 | 11007 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00270 | 3503 | 4363 | blaSHV-215 | 0/0 | 100.0 | 99.8 | NG_062287.1 | class A beta-lactamase SHV-215 | BETA-LACTAM |
| contig00067 | 13829 | 14689 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00402 | 183 | 656 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00077 | 59 | 470 | fosA_gen | 0/0 | 98.1 | 100.0 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00070 | 6209 | 7384 | oqxA6 | 0/0 | 100.0 | 99.8 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00070 | 3033 | 6185 | oqxB19 | 0/0 | 100.0 | 99.3 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00067 | 4835 | 5491 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00067 | 17110 | 17925 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00067 | 16246 | 17073 | aph(3’’)-Ib | 0/0 | 100.0 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00067 | 15410 | 16246 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00067 | 10132 | 11007 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00270 | 3503 | 4363 | blaSHV-215 | 0/0 | 100.0 | 99.8 | NG_062287.1 | class A beta-lactamase SHV-215 | BETA-LACTAM |
| contig00067 | 13829 | 14689 | blaTEM-1 | 0/0 | 100.0 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00402 | 183 | 656 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00077 | 59 | 470 | fosA_gen | 0/0 | 98.1 | 100.0 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00070 | 6209 | 7384 | oqxA6 | 0/0 | 100.0 | 99.8 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00070 | 3033 | 6185 | oqxB19 | 0/0 | 100.0 | 99.3 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00067 | 4835 | 5491 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00067 | 17110 | 17925 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00230 | 1974 | 2810 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00066 | 7458 | 8333 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00143 | 7354 | 8220 | blaSHV-187_1 | 0/0 | 100.0 | 99.5 | LN515533 | blaSHV-187 | |
| contig00066 | 3776 | 4636 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00230 | 3160 | 3642 | dfrA14_5 | 0/0 | 100.0 | 99.8 | DQ388123 | dfrA14 | Trimethoprim |
| contig00134 | 599 | 1018 | fosA6_1 | 0/0 | 97.0 | 99.5 | KU254579 | fosA6 | Fosfomycin |
| contig00092 | 12283 | 13458 | oqxA_1 | 0/0 | 100.0 | 99.2 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00092 | 9107 | 12259 | oqxB_1 | 0/0 | 100.0 | 99.1 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00066 | 12974 | 13630 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00230 | 4242 | 5057 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00066 | 1676 | 2922 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00230 | 1974 | 2810 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00066 | 7458 | 8333 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00134 | 599 | 1018 | FosA6 | 0/0 | 100.0 | 99.5 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00035 | 37659 | 38021 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.2 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00035 | 37343 | 37672 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 99.7 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00164 | 4015 | 5187 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.4 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00017 | 44947 | 46101 | Klebsiella_pneumoniae_OmpK37 | 7/32 | 99.9 | 95.0 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00007 | 8148 | 9341 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.7 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00066 | 12974 | 13630 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00143 | 7354 | 8220 | SHV-187 | 0/0 | 100.0 | 99.5 | LN515533:0-867 | From the Lahey list of beta-lactamases. | carbapenem, cephalosporin, penam |
| contig00066 | 3776 | 4636 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00230 | 3160 | 3642 | dfrA14 | 0/0 | 100.0 | 100.0 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00092 | 12283 | 13458 | oqxA | 0/0 | 100.0 | 99.2 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00092 | 9107 | 12259 | oqxB | 0/0 | 100.0 | 99.1 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00230 | 4242 | 5057 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00066 | 1676 | 2922 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00230 | 1974 | 2810 | (AGly)strB | 0/0 | 100 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00059 | 18623 | 19783 | (Bla)ampH | 0/0 | 100 | 99.2 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00066 | 7458 | 8333 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00143 | 7354 | 8220 | (Bla)blaSHV-187 | 0/0 | 100 | 99.5 | LN515533:1-867 | (Bla)blaSHV-187 | NA |
| contig00066 | 3776 | 4636 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00134 | 599 | 1018 | (Fcyn)FosA6 | 0/0 | 100 | 99.5 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00092 | 12283 | 13458 | (Flq)OqxA | 0/0 | 100 | 99.2 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00092 | 9107 | 12259 | (Flq)OqxBgb | 0/0 | 100 | 99.1 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00066 | 12974 | 13630 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00230 | 4242 | 5057 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00066 | 1648 | 2922 | (Tet)tetA | 0/0 | 100 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00066 | 2953 | 3603 | (Tet)tetR | 0/0 | 100 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00230 | 3160 | 3633 | (Tmt)dfrA14 | 0/0 | 100 | 99.8 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00230 | 1974 | 2810 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00066 | 7458 | 8333 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00143 | 7354 | 8220 | blaSHV-187 | 0/0 | 100 | 99.5 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00066 | 3776 | 4636 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00230 | 3160 | 3633 | dfrA14 | 0/0 | 100 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00134 | 599 | 1018 | fosA6 | 0/0 | 100 | 99.5 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00092 | 12283 | 13458 | oqxA6 | 0/0 | 100 | 99.6 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00092 | 9107 | 12259 | oqxB22 | 0/0 | 100 | 99.5 | NG_050441.1 | multidrug efflux RND transporter permease subunit OqxB22 | PHENICOL, QUINOLONE |
| contig00066 | 12974 | 13630 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00230 | 4242 | 5057 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00066 | 1648 | 2847 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00230 | 1974 | 2810 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00066 | 7458 | 8333 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00143 | 7354 | 8220 | blaSHV-187 | 0/0 | 100 | 99.5 | NG_050053.1 | class A beta-lactamase SHV-187 | BETA-LACTAM |
| contig00066 | 3776 | 4636 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00230 | 3160 | 3633 | dfrA14 | 0/0 | 100 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00134 | 599 | 1018 | fosA6 | 0/0 | 100 | 99.5 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00092 | 12283 | 13458 | oqxA6 | 0/0 | 100 | 99.6 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00092 | 9107 | 12259 | oqxB22 | 0/0 | 100 | 99.5 | NG_050441.1 | multidrug efflux RND transporter permease subunit OqxB22 | PHENICOL, QUINOLONE |
| contig00066 | 12974 | 13630 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00230 | 4242 | 5057 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00066 | 1648 | 2847 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00355 | 2435 | 3295 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00422 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00067 | 1407 | 2210 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00067 | 571 | 1407 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00459 | 179 | 1054 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00422 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 99.9 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00424 | 109 | 969 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00225 | 4601 | 5083 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00336 | 3325 | 3744 | fosA6_1 | 0/0 | 97.0 | 99.8 | KU254579 | fosA6 | Fosfomycin |
| contig00037 | 6337 | 7512 | oqxA_1 | 0/0 | 100.0 | 98.9 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00037 | 3161 | 6313 | oqxB_1 | 0/0 | 100.0 | 98.6 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00194 | 746 | 1390 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00067 | 2271 | 3086 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00357 | 1712 | 2958 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00355 | 2435 | 3295 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00422 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00067 | 1407 | 2210 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00067 | 571 | 1407 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00459 | 179 | 1054 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00336 | 3325 | 3744 | FosA6 | 0/0 | 100.0 | 99.8 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00165 | 6539 | 6901 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.5 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00165 | 6223 | 6552 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 100.0 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00177 | 4031 | 5203 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00279 | 971 | 2125 | Klebsiella_pneumoniae_OmpK37 | 7/32 | 99.9 | 95.4 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00045 | 3115 | 4308 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.9 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00422 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 99.9 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00194 | 746 | 1425 | QnrB17 | 1/1 | 99.8 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00424 | 109 | 969 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00225 | 4601 | 5083 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00037 | 6337 | 7512 | oqxA | 0/0 | 100.0 | 98.9 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00037 | 3161 | 6313 | oqxB | 0/0 | 100.0 | 98.6 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00067 | 2271 | 3086 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00357 | 1712 | 2958 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00355 | 2435 | 3295 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00067 | 1407 | 2210 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00067 | 571 | 1407 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00111 | 11436 | 12596 | (Bla)ampH | 0/0 | 100.0 | 99.1 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00459 | 179 | 1054 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00422 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 99.9 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00424 | 109 | 969 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00336 | 3325 | 3744 | (Fcyn)FosA6 | 0/0 | 100.0 | 99.8 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00037 | 6337 | 7512 | (Flq)OqxA | 0/0 | 100.0 | 98.9 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00037 | 3161 | 6313 | (Flq)OqxBgb | 0/0 | 100.0 | 98.6 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00194 | 746 | 1425 | (Flq)qnrB1 | 1/1 | 99.8 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00067 | 2271 | 3086 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00357 | 1684 | 2958 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00225 | 4601 | 5074 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00355 | 2435 | 3295 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00422 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00067 | 1407 | 2234 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00067 | 571 | 1407 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00459 | 179 | 1054 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00422 | 578 | 1408 | blaOXA-1 | 0/0 | 100 | 99.9 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00424 | 109 | 969 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00225 | 4601 | 5074 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00336 | 3325 | 3744 | fosA6 | 0/0 | 100 | 99.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00037 | 6337 | 7512 | oqxA5 | 0/0 | 100 | 99.4 | NG_050423.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA5 | PHENICOL, QUINOLONE |
| contig00037 | 3161 | 6313 | oqxB19 | 0/0 | 100 | 99.4 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00194 | 746 | 1390 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00067 | 2271 | 3086 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00357 | 1684 | 2883 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00355 | 2435 | 3295 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00422 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00067 | 1407 | 2234 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00067 | 571 | 1407 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00459 | 179 | 1054 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00422 | 578 | 1408 | blaOXA-1 | 0/0 | 100 | 99.9 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00424 | 109 | 969 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00225 | 4601 | 5074 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00336 | 3325 | 3744 | fosA6 | 0/0 | 100 | 99.8 | NG_051497.1 | fosfomycin resistance glutathione transferase FosA6 | FOSFOMYCIN |
| contig00037 | 6337 | 7512 | oqxA5 | 0/0 | 100 | 99.4 | NG_050423.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA5 | PHENICOL, QUINOLONE |
| contig00037 | 3161 | 6313 | oqxB19 | 0/0 | 100 | 99.4 | NG_050437.1 | multidrug efflux RND transporter permease subunit OqxB19 | PHENICOL, QUINOLONE |
| contig00194 | 746 | 1390 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00067 | 2271 | 3086 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00357 | 1684 | 2883 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00054 | 21369 | 22172 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00054 | 20533 | 21369 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00054 | 15255 | 16130 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00267 | 1122 | 1981 | blaOKP-B-16_1 | 0/0 | 99.9 | 99.8 | AM850918 | blaOKP-B-16 | |
| contig00054 | 18952 | 19812 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00425 | 91 | 732 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00412 | 183 | 665 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00144 | 10718 | 11137 | fosA_6 | 0/0 | 100.0 | 93.3 | ACZD01000244 | fosA | Fosfomycin |
| contig00012 | 46282 | 47457 | oqxA_1 | 0/0 | 100.0 | 93.9 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00012 | 47481 | 50633 | oqxB_1 | 0/0 | 100.0 | 95.6 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00054 | 9958 | 10614 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00298 | 28 | 843 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00155 | 648 | 1894 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00054 | 21369 | 22172 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00054 | 20533 | 21369 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00054 | 15255 | 16130 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00144 | 10718 | 11137 | FosA6 | 0/0 | 100.0 | 92.9 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00132 | 8171 | 8500 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 92.7 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00187 | 4019 | 5191 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 94.6 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00064 | 1919 | 3043 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 92.4 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00006 | 8317 | 9510 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 95.1 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00267 | 1122 | 1981 | OKP-B-5 | 0/0 | 99.9 | 99.8 | AM850918:24-885 | OKP-B-5 is a beta-lactamase found in Klebsiella pneumoniae | cephalosporin, penam |
| contig00054 | 9958 | 10614 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00054 | 18952 | 19812 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00425 | 91 | 732 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00412 | 183 | 665 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00012 | 46282 | 47457 | oqxA | 0/0 | 100.0 | 93.9 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00012 | 47481 | 50633 | oqxB | 0/0 | 100.0 | 95.6 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00298 | 28 | 843 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00155 | 648 | 1894 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00054 | 21369 | 22172 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00054 | 20533 | 21369 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00141 | 5319 | 6479 | (Bla)ampH | 0/0 | 100.0 | 96.0 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00054 | 15255 | 16130 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00267 | 1122 | 1981 | (Bla)blaOKP-B-5 | 0/0 | 99.9 | 99.8 | AY512506:68-928 | (Bla)blaOKP-B-5 | NA |
| contig00054 | 18952 | 19812 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00144 | 10718 | 11137 | (Fcyn)FosA6 | 0/0 | 100.0 | 92.9 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00012 | 46282 | 47457 | (Flq)OqxA | 0/0 | 100.0 | 93.9 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00012 | 47481 | 50633 | (Flq)OqxBgb | 0/0 | 100.0 | 95.6 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00054 | 9958 | 10614 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00425 | 91 | 732 | (Phe)catA2 | 0/0 | 100.0 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00298 | 28 | 843 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00155 | 648 | 1922 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00155 | 1 | 617 | (Tet)tetR | 0/0 | 94.8 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00412 | 183 | 656 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00054 | 21369 | 22196 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00054 | 20533 | 21369 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00054 | 15255 | 16130 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00267 | 1121 | 1981 | blaOKP-B-45 | 0/0 | 100 | 99.9 | NG_067154.1 | class A broad-spectrum beta-lactamase OKP-B-45 | BETA-LACTAM |
| contig00054 | 18952 | 19812 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00425 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00412 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00144 | 10718 | 11137 | fosA_gen | 0/0 | 100 | 93.3 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00012 | 46282 | 47457 | oqxA10 | 0/0 | 100 | 94.1 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00012 | 47481 | 50633 | oqxB11 | 0/0 | 100 | 96.2 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00054 | 9958 | 10614 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00298 | 28 | 843 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00155 | 723 | 1922 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00054 | 21369 | 22196 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00054 | 20533 | 21369 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00054 | 15255 | 16130 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00267 | 1121 | 1981 | blaOKP-B-45 | 0/0 | 100 | 99.9 | NG_067154.1 | class A broad-spectrum beta-lactamase OKP-B-45 | BETA-LACTAM |
| contig00054 | 18952 | 19812 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00425 | 91 | 732 | catA2 | 0/0 | 100 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00412 | 183 | 656 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00144 | 10718 | 11137 | fosA_gen | 0/0 | 100 | 93.3 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00012 | 46282 | 47457 | oqxA10 | 0/0 | 100 | 94.1 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00012 | 47481 | 50633 | oqxB11 | 0/0 | 100 | 96.2 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00054 | 9958 | 10614 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00298 | 28 | 843 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00155 | 723 | 1922 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00217 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00234 | 1540 | 2139 | aac(6’)-Ib-cr_1 | 0/0 | 100 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00003 | 76106 | 77251 | blaACT-6_1 | 0/0 | 100 | 91.9 | FJ237366 | blaACT-6 | |
| contig00097 | 2637 | 3512 | blaCTX-M-15_1 | 0/0 | 100 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00234 | 579 | 1409 | blaOXA-1_1 | 0/0 | 100 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00037 | 14325 | 15185 | blaTEM-1A_1 | 0/0 | 100 | 100.0 | HM749966 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00037 | 5989 | 6462 | dfrA15_2 | 0/0 | 100 | 100.0 | AF221900 | dfrA15 | Trimethoprim |
| contig00174 | 3188 | 3613 | fosA_1 | 0/0 | 100 | 96.0 | M85195 | fosA | Fosfomycin |
| contig00032 | 4404 | 5048 | qnrB1_1 | 0/0 | 100 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00037 | 3752 | 4618 | sul1_5 | 0/0 | 100 | 99.8 | EU780013 | sul1 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00217 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00234 | 1540 | 2139 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00003 | 76106 | 77251 | ACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:40-1186 | ACT-6 is a beta-lactamase found in Klebsiella pneumoniae | carbapenem, cephalosporin, cephamycin, penam |
| contig00097 | 2637 | 3512 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00074 | 14775 | 15968 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 94.0 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00174 | 3188 | 3613 | FosA2 | 0/0 | 100.0 | 91.8 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00234 | 579 | 1409 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00032 | 4368 | 5048 | QnrB17 | 0/0 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00037 | 14325 | 15185 | TEM-150 | 0/0 | 100.0 | 99.9 | AM183304:208-1069 | TEM-150 is a beta-lactamase found in Enterobacter spp. E. coli and Klebsiella pneumoniae. | cephalosporin, monobactam, penam, penem |
| contig00037 | 5989 | 6462 | dfrA15 | 0/0 | 100.0 | 100.0 | KF534911:39-513 | dfrA15 is an integron-encoded dihydrofolate reductase found in Vibrio cholerae | diaminopyrimidine |
| contig00143 | 4082 | 4433 | ramA | 0/0 | 93.9 | 90.9 | JQ727668:0-375 | RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00037 | 3752 | 4591 | sul1 | 0/0 | 100.0 | 99.9 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00217 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00037 | 5096 | 5897 | (AGly)aadA1-pm | 0/0 | 96.5 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00003 | 76106 | 77251 | (Bla)blaACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:41-1186 | (Bla)blaACT-6 | NA |
| contig00097 | 2637 | 3512 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00234 | 579 | 1409 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00037 | 14325 | 15185 | (Bla)blaTEM-150 | 0/0 | 100.0 | 99.9 | AM183304:209-1069 | (Bla)blaTEM-150 | NA |
| contig00174 | 3188 | 3613 | (Fcyn)FosA2 | 0/0 | 100.0 | 91.8 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00032 | 4368 | 5048 | (Flq)qnrB1 | 0/0 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00037 | 3752 | 4591 | (Sul)sul1 | 0/0 | 100.0 | 99.9 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00037 | 5989 | 6462 | (Tmt)dfrA15b | 0/0 | 100.0 | 99.2 | AJ867237:177-650 | (Tmt)dfrA15b | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00217 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00234 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00037 | 5096 | 5887 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00003 | 76106 | 77251 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00097 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00234 | 579 | 1409 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00037 | 14325 | 15185 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00037 | 5989 | 6462 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00174 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00032 | 4404 | 5048 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00037 | 3752 | 4591 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00217 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00234 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00037 | 5096 | 5887 | aadA1 | 0/0 | 100 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00003 | 76106 | 77251 | blaACT-63 | 0/0 | 100 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00097 | 2637 | 3512 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00234 | 579 | 1409 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00037 | 14325 | 15185 | blaTEM-150 | 0/0 | 100 | 99.9 | NG_050194.1 | class A beta-lactamase TEM-150 | BETA-LACTAM |
| contig00037 | 5989 | 6462 | dfrA15 | 0/0 | 100 | 100.0 | NG_047702.1 | trimethoprim-resistant dihydrofolate reductase DfrA15 | TRIMETHOPRIM |
| contig00174 | 3188 | 3613 | fosA | 0/0 | 100 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00032 | 4404 | 5048 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00037 | 3752 | 4591 | sul1 | 0/0 | 100 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00276 | 1594 | 2430 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00054 | 7984 | 8859 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00054 | 5342 | 6202 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00276 | 2780 | 3262 | dfrA14_5 | 0/0 | 100.0 | 99.8 | DQ388123 | dfrA14 | Trimethoprim |
| contig00142 | 10744 | 11163 | fosA_6 | 0/0 | 100.0 | 92.6 | ACZD01000244 | fosA | Fosfomycin |
| contig00015 | 41702 | 42877 | oqxA_1 | 0/0 | 100.0 | 94.1 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00015 | 42901 | 46053 | oqxB_1 | 0/0 | 100.0 | 95.4 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00054 | 13500 | 14156 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00276 | 3862 | 4677 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00054 | 3242 | 4488 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00276 | 1594 | 2430 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00054 | 7984 | 8859 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00142 | 10744 | 11163 | FosA5 | 0/0 | 100.0 | 92.4 | KP143090.1:1619-1199 | fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin | fosfomycin |
| contig00133 | 8200 | 8529 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 93.3 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00077 | 1890 | 3014 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 92.6 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00044 | 3176 | 4369 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 95.1 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00054 | 13500 | 14156 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig00054 | 5342 | 6202 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00276 | 2780 | 3262 | dfrA14 | 0/0 | 100.0 | 100.0 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00015 | 41702 | 42877 | oqxA | 0/0 | 100.0 | 94.1 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00015 | 42901 | 46053 | oqxB | 0/0 | 100.0 | 95.4 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00276 | 3862 | 4677 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00054 | 3242 | 4488 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00276 | 1594 | 2430 | (AGly)strB | 0/0 | 100 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00113 | 5324 | 6484 | (Bla)ampH | 0/0 | 100 | 95.8 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00054 | 7984 | 8859 | (Bla)blaCTX-M-15 | 0/0 | 100 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00054 | 5342 | 6202 | (Bla)blaTEM-105 | 0/0 | 100 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00142 | 10744 | 11163 | (Fcyn)FosA5 | 0/0 | 100 | 92.4 | KP143090:1200-1619 | (Fcyn)FosA5 | NA |
| contig00015 | 41702 | 42877 | (Flq)OqxA | 0/0 | 100 | 94.1 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00015 | 42901 | 46053 | (Flq)OqxBgb | 0/0 | 100 | 95.4 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00054 | 13500 | 14156 | (Flq)qnr-S1 | 0/0 | 100 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00276 | 3862 | 4677 | (Sul)sul2 | 0/0 | 100 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00054 | 3214 | 4488 | (Tet)tetA | 0/0 | 100 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00054 | 4519 | 5169 | (Tet)tetR | 0/0 | 100 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00276 | 2780 | 3253 | (Tmt)dfrA14 | 0/0 | 100 | 99.8 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00276 | 1594 | 2430 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00054 | 7984 | 8859 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00054 | 5342 | 6202 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00276 | 2780 | 3253 | dfrA14 | 0/0 | 100 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00142 | 10744 | 11163 | fosA_gen | 0/0 | 100 | 92.6 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00015 | 41702 | 42877 | oqxA10 | 0/0 | 100 | 94.6 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00015 | 42901 | 46053 | oqxB11 | 0/0 | 100 | 96.0 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00054 | 13500 | 14156 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00276 | 3862 | 4677 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00054 | 3214 | 4413 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00276 | 1594 | 2430 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00054 | 7984 | 8859 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00054 | 5342 | 6202 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00276 | 2780 | 3253 | dfrA14 | 0/0 | 100 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00142 | 10744 | 11163 | fosA_gen | 0/0 | 100 | 92.6 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00015 | 41702 | 42877 | oqxA10 | 0/0 | 100 | 94.6 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00015 | 42901 | 46053 | oqxB11 | 0/0 | 100 | 96.0 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00054 | 13500 | 14156 | qnrS1 | 0/0 | 100 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00276 | 3862 | 4677 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00054 | 3214 | 4413 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00846 | 1746 | 2606 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00929 | 1540 | 2139 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00674 | 758 | 1594 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00106 | 2995 | 4140 | blaACT-6_1 | 0/0 | 100.0 | 91.9 | FJ237366 | blaACT-6 | |
| contig00114 | 1748 | 2623 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00929 | 579 | 1409 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig01227 | 109 | 920 | blaTEM-1B_1 | 0/0 | 94.3 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00674 | 1944 | 2426 | dfrA14_5 | 0/0 | 100.0 | 99.8 | DQ388123 | dfrA14 | Trimethoprim |
| contig00585 | 3188 | 3613 | fosA_1 | 0/0 | 100.0 | 96.0 | M85195 | fosA | Fosfomycin |
| contig00256 | 10713 | 11132 | fosA_6 | 0/0 | 100.0 | 92.6 | ACZD01000244 | fosA | Fosfomycin |
| contig00493 | 2502 | 5654 | oqxB_1 | 0/0 | 100.0 | 95.4 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00146 | 3627 | 4271 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00114 | 7264 | 7920 | qnrS1_1 | 0/0 | 100.0 | 100.0 | AB187515 | qnrS1 | Ciprofloxacin |
| contig00641 | 1588 | 2454 | sul1_5 | 0/0 | 100.0 | 99.8 | EU780013 | sul1 | Sulfamethoxazole |
| contig00674 | 3026 | 3841 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00201 | 11706 | 12952 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00846 | 1746 | 2606 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00929 | 1540 | 2139 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00106 | 2995 | 4140 | ACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:40-1186 | ACT-6 is a beta-lactamase found in Klebsiella pneumoniae | carbapenem, cephalosporin, cephamycin, penam |
| contig00674 | 758 | 1594 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00114 | 1748 | 2623 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00242 | 3244 | 4437 | Enterobacter_cloacae_acrA | 0/0 | 100.0 | 94.0 | DQ679966:299-1493 | AcrA is a subunit of the AcrAB-TolC multidrug efflux system that in E. cloacae. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00585 | 3188 | 3613 | FosA2 | 0/0 | 100.0 | 91.8 | EU487198:216-642 | An enzyme that confers resistance to fosfomycin in Enterobacter cloacae by breaking the epoxide ring of the molecule. It depends on the cofactors Manganese (II) and Potassium and uses Glutathione (GSH) as the nucleophilic molecule. | fosfomycin |
| contig00256 | 10713 | 11132 | FosA5 | 0/0 | 100.0 | 92.4 | KP143090.1:1619-1199 | fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin | fosfomycin |
| contig00484 | 2109 | 2438 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 93.3 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00115 | 1081 | 2205 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 92.6 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00263 | 3136 | 4329 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 95.1 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00929 | 579 | 1409 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00146 | 3591 | 4271 | QnrB17 | 0/0 | 100.0 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00114 | 7264 | 7920 | QnrS1 | 0/0 | 100.0 | 100.0 | DQ485529.1:0-657 | QnrS1 is a plasmid-mediated quinolone resistance protein found in Shigella flexneri | fluoroquinolone |
| contig01227 | 109 | 920 | TEM-206 | 0/0 | 94.3 | 100.0 | KC783461:0-861 | From the Lahey list of beta-lactamases. Not yet released. | cephalosporin, monobactam, penam, penem |
| contig00674 | 1944 | 2426 | dfrA14 | 0/0 | 100.0 | 100.0 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00493 | 2502 | 5654 | oqxB | 0/0 | 100.0 | 95.4 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00369 | 4018 | 4369 | ramA | 0/0 | 93.9 | 90.9 | JQ727668:0-375 | RamA (resistance antibiotic multiple) is a positive regulator of AcrAB-TolC and leads to high level multidrug resistance in Klebsiella pneumoniae Salmonella enterica and Enterobacter aerugenes increasing the expression of both the mar operon as well as AcrAB. RamA also decreases OmpF expression. | carbapenem, cephalosporin, cephamycin, fluoroquinolone, glycylcycline, monobactam, penam, penem, phenicol, rifamycin, tetracycline, triclosan |
| contig00641 | 1615 | 2454 | sul1 | 0/0 | 100.0 | 99.9 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00674 | 3026 | 3841 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00201 | 11706 | 12952 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00846 | 1746 | 2606 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00641 | 309 | 1110 | (AGly)aadA1-pm | 0/0 | 96.5 | 99.9 | JQ690540:7968-8798 | (AGly)aadA1-pm | NA |
| contig00674 | 758 | 1594 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00248 | 5304 | 6464 | (Bla)ampH | 0/0 | 100.0 | 95.8 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00106 | 2995 | 4140 | (Bla)blaACT-6 | 0/0 | 100.0 | 91.9 | FJ237366:41-1186 | (Bla)blaACT-6 | NA |
| contig00114 | 1748 | 2623 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00929 | 579 | 1409 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig01227 | 109 | 920 | (Bla)blaTEM-206 | 0/0 | 94.3 | 100.0 | KC783461:1-861 | (Bla)blaTEM-206 | NA |
| contig00585 | 3188 | 3613 | (Fcyn)FosA2 | 0/0 | 100.0 | 91.8 | EU487198:217-642 | (Fcyn)FosA2 | NA |
| contig00256 | 10713 | 11132 | (Fcyn)FosA5 | 0/0 | 100.0 | 92.4 | KP143090:1200-1619 | (Fcyn)FosA5 | NA |
| contig00493 | 2502 | 5654 | (Flq)OqxBgb | 0/0 | 100.0 | 95.4 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00114 | 7264 | 7920 | (Flq)qnr-S1 | 0/0 | 100.0 | 100.0 | AB187515:9737-10393 | (Flq)qnr-S1 | NA |
| contig00146 | 3591 | 4271 | (Flq)qnrB1 | 0/0 | 100.0 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00641 | 1615 | 2454 | (Sul)sul1 | 0/0 | 100.0 | 99.9 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00674 | 3026 | 3841 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00201 | 11678 | 12952 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00201 | 12983 | 13633 | (Tet)tetR | 0/0 | 100.0 | 100.0 | HF545434:53576-54226 | (Tet)tetR | NA |
| contig00674 | 1944 | 2417 | (Tmt)dfrA14 | 0/0 | 100.0 | 99.8 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00846 | 1746 | 2606 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00929 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00641 | 319 | 1110 | aadA1 | 0/0 | 100.0 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00674 | 758 | 1594 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00106 | 2995 | 4140 | blaACT-63 | 0/0 | 100.0 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00114 | 1748 | 2623 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00929 | 579 | 1409 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig01227 | 109 | 920 | blaTEM-1 | 0/0 | 94.3 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00674 | 1944 | 2417 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00585 | 3188 | 3613 | fosA | 0/0 | 100.0 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00256 | 10713 | 11132 | fosA_gen | 0/0 | 100.0 | 92.6 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00493 | 2502 | 5654 | oqxB11 | 0/0 | 100.0 | 96.0 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00146 | 3627 | 4271 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00114 | 7264 | 7920 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00641 | 1615 | 2454 | sul1 | 0/0 | 100.0 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00674 | 3026 | 3841 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00201 | 11678 | 12877 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00846 | 1746 | 2606 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00929 | 1540 | 2094 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00641 | 319 | 1110 | aadA1 | 0/0 | 100.0 | 99.9 | NG_052266.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA1 | STREPTOMYCIN |
| contig00674 | 758 | 1594 | aph(6)-Id | 0/0 | 100.0 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00106 | 2995 | 4140 | blaACT-63 | 0/0 | 100.0 | 99.4 | NG_061406.1 | cephalosporin-hydrolyzing class C beta-lactamase ACT-63 | CEPHALOSPORIN |
| contig00114 | 1748 | 2623 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00929 | 579 | 1409 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig01227 | 109 | 920 | blaTEM-1 | 0/0 | 94.3 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00674 | 1944 | 2417 | dfrA14 | 0/0 | 100.0 | 100.0 | NG_047696.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00585 | 3188 | 3613 | fosA | 0/0 | 100.0 | 96.0 | NG_050405.1 | fosfomycin resistance glutathione transferase FosA | FOSFOMYCIN |
| contig00256 | 10713 | 11132 | fosA_gen | 0/0 | 100.0 | 92.6 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00493 | 2502 | 5654 | oqxB11 | 0/0 | 100.0 | 96.0 | NG_050429.1 | multidrug efflux RND transporter permease subunit OqxB11 | PHENICOL, QUINOLONE |
| contig00146 | 3627 | 4271 | qnrB1 | 0/0 | 100.0 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00114 | 7264 | 7920 | qnrS1 | 0/0 | 100.0 | 100.0 | NG_050543.1 | quinolone resistance pentapeptide repeat protein QnrS1 | QUINOLONE |
| contig00641 | 1615 | 2454 | sul1 | 0/0 | 100.0 | 99.9 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00674 | 3026 | 3841 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00201 | 11678 | 12877 | tet(A) | 0/0 | 100.0 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00421 | 1694 | 2554 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00454 | 1539 | 2138 | aac(6’)-Ib-cr_1 | 0/0 | 100.0 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00079 | 3407 | 4210 | aph(3’’)-Ib_5 | 0/0 | 100.0 | 100.0 | AF321551 | aph(3’’)-Ib | Streptomycin |
| contig00079 | 2571 | 3407 | aph(6)-Id_1 | 0/0 | 100.0 | 100.0 | M28829 | aph(6)-Id | Streptomycin |
| contig00002 | 576 | 1451 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00454 | 578 | 1408 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00079 | 990 | 1850 | blaTEM-1B_1 | 0/0 | 100.0 | 100.0 | AY458016 | blaTEM-1B | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00219 | 4601 | 5083 | dfrA14_5 | 0/0 | 100.0 | 99.6 | DQ388123 | dfrA14 | Trimethoprim |
| contig00116 | 103 | 522 | fosA_3 | 0/0 | 100.0 | 99.8 | ACWO01000079 | fosA | Fosfomycin |
| contig00056 | 6720 | 7895 | oqxA_1 | 0/0 | 100.0 | 99.4 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00056 | 3544 | 6696 | oqxB_1 | 0/0 | 100.0 | 98.7 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00344 | 818 | 1462 | qnrB1_1 | 0/0 | 100.0 | 100.0 | DQ351241 | qnrB1 | Ciprofloxacin |
| contig00079 | 4271 | 5086 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| contig00366 | 1711 | 2957 | tet(A)_6 | 0/0 | 97.8 | 100.0 | AF534183 | tet(A) | Doxycycline, Tetracycline |
| contig00415 | 778 | 1962 | tet(D)_1 | 0/0 | 100.0 | 100.0 | AF467077 | tet(D) | Doxycycline, Tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00421 | 1694 | 2554 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00454 | 1539 | 2138 | AAC(6’)-Ib-cr | 0/0 | 100.0 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00079 | 3407 | 4210 | APH(3’’)-Ib | 0/0 | 100.0 | 99.8 | AF313472:15593-16397 | APH(3’’)-Ib is an aminoglycoside phosphotransferase encoded by plasmids transposons integrative conjugative elements and chromosomes in Enterobacteriaceae and Pseudomonas spp. | aminoglycoside |
| contig00079 | 2571 | 3407 | APH(6)-Id | 0/0 | 100.0 | 99.9 | AF024602:3155-3992 | APH(6)-Id is an aminoglycoside phosphotransferase encoded by plasmids integrative conjugative elements and chromosomal genomic islands in K. pneumoniae Salmonella spp. E. coli Shigella flexneri Providencia alcalifaciens Pseudomonas spp. V. cholerae Edwardsiella tarda Pasteurella multocida and Aeromonas bestiarum | aminoglycoside |
| contig00002 | 576 | 1451 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00116 | 103 | 522 | FosA6 | 0/0 | 100.0 | 99.5 | KU254579.1:59421-59841 | fosA6 is a plasmid-encoded enzyme that confers resistance to fosfomycin in Escherichia coli by breaking the epoxide ring of the molecule. | fosfomycin |
| contig00152 | 6554 | 6916 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 99.2 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00152 | 6238 | 6567 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 99.4 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00180 | 3925 | 5097 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 99.3 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00280 | 1031 | 2185 | Klebsiella_pneumoniae_OmpK37 | 5/30 | 100.0 | 94.7 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00033 | 3123 | 4316 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 97.7 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00454 | 578 | 1408 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00344 | 818 | 1497 | QnrB17 | 1/1 | 99.8 | 99.1 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00079 | 990 | 1850 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00219 | 4601 | 5083 | dfrA14 | 0/0 | 100.0 | 99.8 | EU780012:2162-2645 | dfrA14 is an integron-encoded dihydrofolate reductase found in Escherichia coli | diaminopyrimidine |
| contig00056 | 6720 | 7895 | oqxA | 0/0 | 100.0 | 99.4 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00056 | 3544 | 6696 | oqxB | 0/0 | 100.0 | 98.7 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00079 | 4271 | 5086 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| contig00366 | 1711 | 2957 | tet(A) | 0/0 | 97.8 | 100.0 | AF534183.1:2970-4245 | TetA is a tetracycline efflux pump found in many species of Gram-negative bacteria. | tetracycline |
| contig00415 | 778 | 1962 | tet(D) | 0/0 | 100.0 | 100.0 | AF467077.1:163-1348 | TetD is a tetracycline efflux pump found exclusively in Gram-negative bacteria. | tetracycline |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00421 | 1694 | 2554 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00079 | 3407 | 4210 | (AGly)strA | 0/0 | 100.0 | 99.9 | AB366441:22458-23261 | (AGly)strA | NA |
| contig00079 | 2571 | 3407 | (AGly)strB | 0/0 | 100.0 | 100.0 | FJ474091:264-1100 | (AGly)strB | NA |
| contig00064 | 11387 | 12547 | (Bla)ampH | 0/0 | 100.0 | 99.1 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00002 | 576 | 1451 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00454 | 578 | 1408 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00079 | 990 | 1850 | (Bla)blaTEM-105 | 0/0 | 100.0 | 99.9 | AF516720:215-1075 | (Bla)blaTEM-105 | NA |
| contig00116 | 103 | 522 | (Fcyn)FosA6 | 0/0 | 100.0 | 99.5 | KU254579:59422-59841 | (Fcyn)FosA6 | NA |
| contig00056 | 6720 | 7895 | (Flq)OqxA | 0/0 | 100.0 | 99.4 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00056 | 3544 | 6696 | (Flq)OqxBgb | 0/0 | 100.0 | 98.7 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00344 | 818 | 1497 | (Flq)qnrB1 | 1/1 | 99.8 | 99.8 | DQ351241:1-681 | (Flq)qnrB1 | NA |
| contig00079 | 4271 | 5086 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00366 | 1683 | 2957 | (Tet)tetA | 0/0 | 100.0 | 100.0 | JX424423:94438-95712 | (Tet)tetA | NA |
| contig00415 | 778 | 1962 | (Tet)tetD | 0/0 | 100.0 | 100.0 | AB089602:1521-2705 | (Tet)tetD | NA |
| contig00219 | 4601 | 5074 | (Tmt)dfrA14 | 0/0 | 100.0 | 100.0 | GU726917:72-545 | (Tmt)dfrA14 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00421 | 1694 | 2554 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00454 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00079 | 3407 | 4234 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00079 | 2571 | 3407 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00002 | 576 | 1451 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00454 | 578 | 1408 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00079 | 990 | 1850 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00219 | 4601 | 5074 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00116 | 103 | 522 | fosA_gen | 0/0 | 100 | 99.8 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00056 | 6720 | 7895 | oqxA10 | 0/0 | 100 | 99.7 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00056 | 3544 | 6696 | oqxB20 | 0/0 | 100 | 99.3 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00344 | 818 | 1462 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00079 | 4271 | 5086 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00366 | 1683 | 2882 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| contig00415 | 778 | 1962 | tet(D) | 0/0 | 100 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00421 | 1694 | 2554 | aac(3)-IIe | 0/0 | 100 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00454 | 1539 | 2093 | aac(6’)-Ib-D181Y | 0/0 | 100 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00079 | 3407 | 4234 | aph(3’’)-Ib | 0/0 | 100 | 100.0 | NG_056002.2 | aminoglycoside O-phosphotransferase APH(3’’)-Ib | STREPTOMYCIN |
| contig00079 | 2571 | 3407 | aph(6)-Id | 0/0 | 100 | 100.0 | NG_047464.1 | aminoglycoside O-phosphotransferase APH(6)-Id | STREPTOMYCIN |
| contig00002 | 576 | 1451 | blaCTX-M-15 | 0/0 | 100 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00454 | 578 | 1408 | blaOXA-1 | 0/0 | 100 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00079 | 990 | 1850 | blaTEM-1 | 0/0 | 100 | 100.0 | NG_050145.1 | class A broad-spectrum beta-lactamase TEM-1 | BETA-LACTAM |
| contig00219 | 4601 | 5074 | dfrA14 | 0/0 | 100 | 100.0 | NG_056035.1 | trimethoprim-resistant dihydrofolate reductase DfrA14 | TRIMETHOPRIM |
| contig00116 | 103 | 522 | fosA_gen | 0/0 | 100 | 99.8 | NG_047884.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00056 | 6720 | 7895 | oqxA10 | 0/0 | 100 | 99.7 | NG_050418.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA10 | PHENICOL, QUINOLONE |
| contig00056 | 3544 | 6696 | oqxB20 | 0/0 | 100 | 99.3 | NG_050439.1 | multidrug efflux RND transporter permease subunit OqxB20 | PHENICOL, QUINOLONE |
| contig00344 | 818 | 1462 | qnrB1 | 0/0 | 100 | 100.0 | NG_050469.1 | quinolone resistance pentapeptide repeat protein QnrB1 | QUINOLONE |
| contig00079 | 4271 | 5086 | sul2 | 0/0 | 100 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| contig00366 | 1683 | 2882 | tet(A) | 0/0 | 100 | 100.0 | NG_048154.1 | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE |
| contig00415 | 778 | 1962 | tet(D) | 0/0 | 100 | 99.9 | NG_048184.1 | tetracycline efflux MFS transporter Tet(D) | TETRACYCLINE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00625 | 672 | 1164 | ARR-3_4 | 0/0 | 90.8 | 99.2 | FM207631 | ARR-3 | |
| contig00548 | 1696 | 2556 | aac(3)-IIa_1 | 0/0 | 100.0 | 99.8 | X51534 | aac(3)-IIa | Gentamicin, Tobramycin |
| contig00625 | 1221 | 1807 | aac(6’)-Ib-cr_1 | 0/0 | 97.8 | 100.0 | DQ303918 | aac(6’)-Ib-cr | Ciprofloxacin |
| contig00823 | 1 | 833 | aadA16_1 | 0/0 | 98.5 | 99.6 | EU675686 | aadA16 | Streptomycin |
| contig00189 | 5268 | 6143 | blaCTX-M-15_1 | 0/0 | 100.0 | 100.0 | AY044436 | blaCTX-M-15 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin |
| contig00673 | 579 | 1409 | blaOXA-1_1 | 0/0 | 100.0 | 100.0 | HQ170510 | blaOXA-1 | Amoxicillin, Amoxicillin+Clavulanic_acid, Ampicillin, Ampicillin+Clavulanic_acid, Cefepime, Piperacillin, Piperacillin+Tazobactam |
| contig00189 | 1586 | 2446 | blaTEM-1C_1 | 0/0 | 100.0 | 100.0 | FJ560503 | blaTEM-1C | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin |
| contig00691 | 89 | 730 | catA2_1 | 0/0 | 100.0 | 96.1 | X53796 | catA2 | Chloramphenicol |
| contig00625 | 66 | 539 | dfrA27_1 | 0/0 | 100.0 | 100.0 | FJ459817 | dfrA27 | Trimethoprim |
| contig00445 | 3281 | 3666 | fosA_6 | 0/0 | 91.9 | 93.5 | ACZD01000244 | fosA | Fosfomycin |
| contig00092 | 10265 | 11440 | oqxA_1 | 0/0 | 100.0 | 96.0 | EU370913 | oqxA | Nalidixic_acid, Ciprofloxacin |
| contig00092 | 7089 | 10241 | oqxB_1 | 0/0 | 100.0 | 97.7 | EU370913 | oqxB | Nalidixic_acid, Ciprofloxacin |
| contig00333 | 19 | 663 | qnrB6_2 | 0/0 | 100.0 | 100.0 | EF523819 | qnrB6 | Ciprofloxacin |
| contig00333 | 4074 | 4940 | sul1_5 | 0/0 | 100.0 | 99.9 | EU780013 | sul1 | Sulfamethoxazole |
| contig00386 | 3442 | 4257 | sul2_2 | 0/0 | 100.0 | 100.0 | AY034138 | sul2 | Sulfamethoxazole |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00548 | 1696 | 2556 | AAC(3)-IIe | 0/0 | 100.0 | 99.5 | EU022315.1:0-861 | AAC(3)-IIe is a plasmid-encoded aminoglycoside acetyltransferase in E. coli | aminoglycoside |
| contig00625 | 1221 | 1807 | AAC(6’)-Ib-cr | 0/0 | 97.8 | 100.0 | DQ303918:0-600 | AAC(6’)-Ib-cr is an aminoglycoside acetyltransferase encoded by plasmids transposons integrons in Enterobacteriaceae. The aac(6’)-Ib-cr variant gene can induce resistance against aminoglycoside and fluoroquinolone simultaneously | aminoglycoside, fluoroquinolone |
| contig00189 | 5268 | 6143 | CTX-M-15 | 0/0 | 100.0 | 100.0 | AY044436:1435-2311 | CTX-M-15 is a beta-lactamase found in the Enterobacteriaceae family | cephalosporin |
| contig00445 | 3281 | 3666 | FosA5 | 0/0 | 91.9 | 92.8 | KP143090.1:1619-1199 | fosA5 is a fosfomycin resistance gene isolated from clinical strain of Escherichia coli E265. It is susceptible to amikacin tetracycline and imipenem and resistant to sulphonamide cephalosporins gentamicin ciprofloxacin chloramphenicol and streptomycin | fosfomycin |
| contig00330 | 2318 | 2680 | Klebsiella_pneumoniae_KpnE | 0/0 | 100.0 | 91.7 | AP006725.1:2483889-2484252 | KpnE subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00330 | 2002 | 2331 | Klebsiella_pneumoniae_KpnF | 0/0 | 100.0 | 94.8 | AP006725.1:2484238-2484568 | KpnF subunit of KpnEF resembles EbrAB from E. coli. Mutation in KpnEF resulted in increased susceptibility to cefepime ceftriaxon colistin erythromycin rifampin tetracycline and streptomycin as well as enhanced sensitivity toward sodium dodecyl sulfate deoxycholate dyes benzalkonium chloride chlorhexidine and triclosan. | aminoglycoside, cephalosporin, macrolide, peptide, rifamycin, tetracycline |
| contig00255 | 3946 | 5118 | Klebsiella_pneumoniae_KpnG | 0/0 | 100.0 | 94.6 | ACWO01000051.1:22092-23265 | KpnG consists of ~390 residues and resembles EmrA of E. coli. Disruption of the pump components KpnG-KpnH signficantly decrease resistance to azithromycin ceftazidime ciprofloxacin ertapenem erythromycin gentamicin imipenem ticarcillin norfloxacin polymyxin-B piperacillin spectinomycin tobramycin and streptomycin | aminoglycoside, carbapenem, cephalosporin, fluoroquinolone, macrolide, penam, penem, peptide |
| contig00467 | 2364 | 3488 | Klebsiella_pneumoniae_OmpK37 | 0/0 | 100.0 | 95.6 | AJ011502.1:300-1425 | Klebsiella pneumoniae outer membrane porin protein. Is preferentially detected in porin-deficient strains. Functional characterization of this new porin revealed a narrower pore than those of porins OmpK35 and OmpK36 which did not allow penetration by certain beta-lactams. Also when a resistant strain expresses porin OmpK37 is less susceptible to cefotaxime and cefoxitin than when it is expressing either OmpK36 or OmpK35. | carbapenem, cephalosporin, cephamycin, monobactam, penam, penem |
| contig00021 | 3004 | 4197 | Klebsiella_pneumoniae_acrA | 2/3 | 99.8 | 94.9 | AJ318073.1:793-1990 | AcrA is a subunit of the AcrAB multidrug efflux system that in K. pneumoniae which is encoded by the acrRAB operon. | cephalosporin, fluoroquinolone, glycylcycline, penam, phenicol, rifamycin, tetracycline, triclosan |
| contig00673 | 579 | 1409 | OXA-1 | 0/0 | 100.0 | 100.0 | JN420336.1:2230-1399 | OXA-1 is a beta-lactamase found in E. coli | cephalosporin, penam |
| contig00333 | 1 | 663 | QnrB17 | 0/0 | 97.4 | 99.8 | AM919398:0-681 | QnrB17 is a plasmid-mediated quinolone resistance protein found in Citrobacter freundii | fluoroquinolone |
| contig00189 | 1586 | 2446 | TEM-1 | 0/0 | 100.0 | 99.9 | AL513383:161910-162771 | TEM-1 is a broad-spectrum beta-lactamase found in many Gram-negative bacteria. Confers resistance to penicillins and first generation cephalosphorins. | cephalosporin, monobactam, penam, penem |
| contig00823 | 1 | 833 | aadA16 | 0/0 | 98.5 | 99.6 | EU675686:3196-4042 | aadA16 is an aminoglycoside nucleotidyltransferase gene encoded by plasmids and integrons in E. coli V. cholerae and K. pneumoniae | aminoglycoside |
| contig00625 | 672 | 1124 | arr-3 | 0/0 | 100.0 | 100.0 | EU675686:1956-2409 | arr-3 is a plasmid-encoded ribosyltransferase found in Vibrio fluvialis | rifamycin |
| contig00691 | 89 | 730 | catII_from_Escherichia_coli_K-12 | 0/0 | 100.0 | 96.1 | X53796.1:186-828 | catII is a chloramphenicol acetyltransferase. This particular catII is found in E.coli K-12. Confers resistance to chloramphenicol. | phenicol |
| contig00625 | 66 | 539 | dfrA27 | 0/0 | 100.0 | 100.0 | KP076293.1:2347-2821 | A dihydrofolate reductase and trimethoprim resistance gene from non-O1 non-O139 Vibrio cholerae | diaminopyrimidine |
| contig00092 | 10265 | 11440 | oqxA | 0/0 | 100.0 | 96.0 | EU370913.1:46651-47827 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00092 | 7089 | 10241 | oqxB | 0/0 | 100.0 | 97.7 | EU370913.1:47850-51003 | RND efflux pump conferring resistance to fluoroquinolone | diaminopyrimidine, fluoroquinolone, glycylcycline, nitrofuran, tetracycline |
| contig00333 | 4074 | 4913 | sul1 | 0/0 | 100.0 | 100.0 | JF969163:1053-1893 | Sul1 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria. It is linked to other resistance genes of class 1 integrons. | sulfonamide |
| contig00386 | 3442 | 4257 | sul2 | 0/0 | 100.0 | 100.0 | AY055428.1:21084-20268 | Sul2 is a sulfonamide resistant dihydropteroate synthase of Gram-negative bacteria usually found on small plasmids. | sulfonamide |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00548 | 1696 | 2556 | (AGly)aac3-IIa | 0/0 | 100.0 | 99.8 | X51534:91-951 | (AGly)aac3-IIa | NA |
| contig00625 | 1221 | 1807 | (AGly)aac6-Ib | 0/0 | 96.9 | 99.5 | M21682:380-985 | (AGly)aac6-Ib | NA |
| contig00823 | 1 | 833 | (AGly)aadA16 | 0/0 | 98.5 | 99.6 | EU675686:3197-4042 | (AGly)aadA16 | NA |
| contig00226 | 1508 | 2668 | (Bla)ampH | 0/0 | 100.0 | 97.8 | CP003785:4208384-4209544 | (Bla)ampH | NA |
| contig00189 | 5268 | 6143 | (Bla)blaCTX-M-15 | 0/0 | 100.0 | 100.0 | JQ686199:261-1136 | (Bla)blaCTX-M-15 | NA |
| contig00673 | 579 | 1409 | (Bla)blaOXA-1 | 0/0 | 100.0 | 100.0 | JQ682867:1-831 | (Bla)blaOXA-1 | NA |
| contig00189 | 1586 | 2446 | (Bla)blaTEM-135 | 0/0 | 100.0 | 99.9 | JQ060998:1-861 | (Bla)blaTEM-135 | NA |
| contig00445 | 3281 | 3666 | (Fcyn)FosA5 | 0/0 | 91.9 | 92.8 | KP143090:1200-1619 | (Fcyn)FosA5 | NA |
| contig00092 | 10265 | 11440 | (Flq)OqxA | 0/0 | 100.0 | 96.0 | EU370913:46652-47827 | (Flq)OqxA | NA |
| contig00092 | 7089 | 10241 | (Flq)OqxBgb | 0/0 | 100.0 | 97.7 | EU370913:47851-51003 | (Flq)OqxBgb | NA |
| contig00333 | 1 | 663 | (Flq)qnrB17 | 0/0 | 97.4 | 99.8 | AM919398:1-681 | (Flq)qnrB17 | NA |
| contig00691 | 89 | 730 | (Phe)catA2 | 0/0 | 100.0 | 96.1 | X53796:187-903 | (Phe)catA2 | NA |
| contig00625 | 672 | 1124 | (Rif)arr3 | 0/0 | 100.0 | 100.0 | JF806499:1353-1805 | (Rif)arr3 | NA |
| contig00333 | 4074 | 4913 | (Sul)sul1 | 0/0 | 100.0 | 100.0 | AF071413:6700-7539 | (Sul)sul1 | NA |
| contig00386 | 3442 | 4257 | (Sul)sul2 | 0/0 | 100.0 | 100.0 | EU360945:1617-2432 | (Sul)sul2 | NA |
| contig00625 | 66 | 539 | (Tmt)dfrA27 | 0/0 | 100.0 | 100.0 | EU675686:2543-3016 | (Tmt)dfrA27 | NA |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00548 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00625 | 1221 | 1775 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00823 | 1 | 833 | aadA16 | 0/0 | 98.5 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00625 | 672 | 1124 | arr-3 | 0/0 | 100.0 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00189 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00673 | 579 | 1409 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00189 | 1586 | 2446 | blaTEM-235 | 0/0 | 100.0 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00691 | 89 | 730 | catA2 | 0/0 | 100.0 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00625 | 66 | 539 | dfrA27 | 0/0 | 100.0 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00445 | 3281 | 3666 | fosA_gen | 0/0 | 91.9 | 93.5 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00092 | 10265 | 11440 | oqxA6 | 0/0 | 100.0 | 96.3 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00092 | 7089 | 10241 | oqxB9 | 0/0 | 100.0 | 99.2 | NG_050458.1 | multidrug efflux RND transporter permease subunit OqxB9 | PHENICOL, QUINOLONE |
| contig00333 | 19 | 663 | qnrB6 | 0/0 | 100.0 | 99.8 | NG_050523.1 | quinolone resistance pentapeptide repeat protein QnrB6 | QUINOLONE |
| contig00333 | 4074 | 4913 | sul1 | 0/0 | 100.0 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00386 | 3442 | 4257 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product | Resistance |
|---|---|---|---|---|---|---|---|---|---|
| contig00548 | 1696 | 2556 | aac(3)-IIe | 0/0 | 100.0 | 99.8 | NG_047244.1 | aminoglycoside N-acetyltransferase AAC(3)-IIe | GENTAMICIN |
| contig00625 | 1221 | 1775 | aac(6’)-Ib-D181Y | 0/0 | 100.0 | 99.8 | NG_067946.1 | AAC(6’)-Ib family aminoglycoside 6’-N-acetyltransferase | AMIKACIN, KANAMYCIN, TOBRAMYCIN |
| contig00823 | 1 | 833 | aadA16 | 0/0 | 98.5 | 100.0 | NG_047339.1 | ANT(3’’)-Ia family aminoglycoside nucleotidyltransferase AadA16 | STREPTOMYCIN |
| contig00625 | 672 | 1124 | arr-3 | 0/0 | 100.0 | 100.0 | NG_048581.1 | NAD(+)–rifampin ADP-ribosyltransferase Arr-3 | RIFAMYCIN |
| contig00189 | 5268 | 6143 | blaCTX-M-15 | 0/0 | 100.0 | 100.0 | NG_048935.1 | class A extended-spectrum beta-lactamase CTX-M-15 | CEPHALOSPORIN |
| contig00673 | 579 | 1409 | blaOXA-1 | 0/0 | 100.0 | 100.0 | NG_049392.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-1 | CEPHALOSPORIN |
| contig00189 | 1586 | 2446 | blaTEM-235 | 0/0 | 100.0 | 99.9 | NG_059898.1 | class A beta-lactamase TEM-235 | BETA-LACTAM |
| contig00691 | 89 | 730 | catA2 | 0/0 | 100.0 | 100.0 | NG_047596.1 | type A-2 chloramphenicol O-acetyltransferase CatII | CHLORAMPHENICOL |
| contig00625 | 66 | 539 | dfrA27 | 0/0 | 100.0 | 100.0 | NG_047723.1 | trimethoprim-resistant dihydrofolate reductase DfrA27 | TRIMETHOPRIM |
| contig00445 | 3281 | 3666 | fosA_gen | 0/0 | 91.9 | 93.5 | NG_047881.1 | FosA family fosfomycin resistance glutathione transferase | FOSFOMYCIN |
| contig00092 | 10265 | 11440 | oqxA6 | 0/0 | 100.0 | 96.3 | NG_050424.1 | multidrug efflux RND transporter periplasmic adaptor subunit OqxA6 | PHENICOL, QUINOLONE |
| contig00092 | 7089 | 10241 | oqxB9 | 0/0 | 100.0 | 99.2 | NG_050458.1 | multidrug efflux RND transporter permease subunit OqxB9 | PHENICOL, QUINOLONE |
| contig00333 | 19 | 663 | qnrB6 | 0/0 | 100.0 | 99.8 | NG_050523.1 | quinolone resistance pentapeptide repeat protein QnrB6 | QUINOLONE |
| contig00333 | 4074 | 4913 | sul1 | 0/0 | 100.0 | 100.0 | NG_048082.1 | sulfonamide-resistant dihydropteroate synthase Sul1 | SULFONAMIDE |
| contig00386 | 3442 | 4257 | sul2 | 0/0 | 100.0 | 100.0 | NG_051852.1 | sulfonamide-resistant dihydropteroate synthase Sul2 | SULFONAMIDE |
Presence/Absence of antibiotic resistance genes (coverage and identity > 90%) on each sample
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Gaps | Gaps in subject (genome) and query (antibiotic resistance gene) |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00297 | 755 | 1314 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00132 | 7365 | 8129 | IncY_1 | 0/0 | 100 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00035 | 11235 | 11344 | Col440I_1 | 0/0 | 96.5 | 93.6 | CP023920.1 | Col440I_1__CP023920.1 |
| contig00137 | 1475 | 2034 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 91.4 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00040 | 3401 | 4165 | IncY_1 | 0/0 | 100.0 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00286 | 2903 | 3289 | IncFIA(HI1)_1_HI1 | 0/0 | 99.7 | 98.5 | AF250878 | IncFIA(HI1)_1_HI1_AF250878 |
| contig00126 | 7720 | 8279 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 100.0 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00106 | 3629 | 3879 | IncR_1 | 0/0 | 100.0 | 100.0 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00390 | 1777 | 1961 | Col(IRGK)_1 | 1/1 | 100 | 98.4 | AY543071 | Col(IRGK)_1__AY543071 |
| contig00075 | 6109 | 6668 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00003 | 16429 | 16988 | IncFIB(pKPHS1)_1_pKPHS1 | 0/0 | 100 | 98.8 | CP003223 | IncFIB(pKPHS1)_1_pKPHS1_CP003223 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00336 | 777 | 1163 | IncFIA(HI1)_1_HI1 | 0/0 | 99.7 | 98.5 | AF250878 | IncFIA(HI1)_1_HI1_AF250878 |
| contig00101 | 3306 | 3865 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 100.0 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00144 | 5035 | 5285 | IncR_1 | 0/0 | 100.0 | 100.0 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00250 | 2081 | 2640 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00001 | 35569 | 36007 | IncFIB(Mar)_1_pNDM-Mar | 0/0 | 100 | 100.0 | JN420336 | IncFIB(Mar)_1_pNDM-Mar_JN420336 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00140 | 5278 | 5837 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00017 | 35438 | 35876 | IncFIB(Mar)_1_pNDM-Mar | 0/0 | 100 | 100.0 | JN420336 | IncFIB(Mar)_1_pNDM-Mar_JN420336 |
| contig00116 | 8635 | 8885 | IncR_1 | 0/0 | 100 | 100.0 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00137 | 1798 | 2440 | IncFIB(pB171)_1_pB171 | 0/0 | 100 | 91.5 | AB024946 | IncFIB(pB171)_1_pB171_AB024946 |
| contig00116 | 3801 | 4030 | IncFII(Yp)_1_Yersenia | 0/0 | 100 | 99.6 | CP000670 | IncFII(Yp)_1_Yersenia_CP000670 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00150 | 1798 | 2440 | IncFIB(pB171)_1_pB171 | 0/0 | 100 | 91.5 | AB024946 | IncFIB(pB171)_1_pB171_AB024946 |
| contig00129 | 3779 | 4008 | IncFII(Yp)_1_Yersenia | 0/0 | 100 | 99.6 | CP000670 | IncFII(Yp)_1_Yersenia_CP000670 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig01418 | 343 | 496 | Col156_1 | 0/0 | 100 | 98.7 | NC_009781 | Col156_1__NC_009781 |
| contig00261 | 3353 | 3912 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00237 | 3638 | 4197 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00174 | 7254 | 7363 | Col440I_1 | 0/0 | 96.5 | 95.5 | CP023920.1 | Col440I_1__CP023920.1 |
| contig00162 | 5141 | 5700 | IncFIB(K)_1_Kpn3 | 0/0 | 100.0 | 92.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00158 | 8427 | 8996 | IncHI1B_1_pNDM-MAR | 0/0 | 100.0 | 99.8 | JN420336 | IncHI1B_1_pNDM-MAR_JN420336 |
| contig00105 | 2158 | 2922 | IncY_1 | 0/0 | 100.0 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00046 | 12532 | 13091 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 98.9 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00014 | 3886 | 4146 | IncFII_1 | 0/0 | 100 | 100.0 | AY458016 | IncFII_1__AY458016 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00036 | 30264 | 30823 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00130 | 3397 | 4161 | IncY_1 | 0/0 | 100 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00187 | 1798 | 2440 | IncFIB(pB171)_1_pB171 | 0/0 | 100 | 91.5 | AB024946 | IncFIB(pB171)_1_pB171_AB024946 |
| contig00155 | 3732 | 3961 | IncFII(Yp)_1_Yersenia | 0/0 | 100 | 99.6 | CP000670 | IncFII(Yp)_1_Yersenia_CP000670 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00014 | 42043 | 42602 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00116 | 8871 | 9121 | IncR_1 | 0/0 | 100 | 99.6 | DQ449578 | IncR_1__DQ449578 |
| contig00110 | 2166 | 2930 | IncY_1 | 0/0 | 100 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00035 | 23711 | 24270 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00667 | 1798 | 2440 | IncFIB(pB171)_1_pB171 | 0/0 | 100 | 91.5 | AB024946 | IncFIB(pB171)_1_pB171_AB024946 |
| contig00523 | 3770 | 3999 | IncFII(Yp)_1_Yersenia | 0/0 | 100 | 99.6 | CP000670 | IncFII(Yp)_1_Yersenia_CP000670 |
| contig00496 | 669 | 919 | IncR_1 | 0/0 | 100 | 99.6 | DQ449578 | IncR_1__DQ449578 |
| contig00259 | 767 | 1531 | IncY_1 | 0/0 | 100 | 99.5 | K02380 | IncY_1__K02380 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00331 | 2550 | 2663 | Col440I_1 | 0/0 | 100 | 94.7 | CP023920.1 | Col440I_1__CP023920.1 |
| contig00002 | 33393 | 33952 | IncFIB(pKPHS1)_1_pKPHS1 | 0/0 | 100 | 98.4 | CP003223 | IncFIB(pKPHS1)_1_pKPHS1_CP003223 |
| contig00018 | 11376 | 11626 | IncR_1 | 0/0 | 100 | 99.2 | DQ449578 | IncR_1__DQ449578 |
| Contig | Start | End | Gene | Gaps | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00279 | 2367 | 2926 | IncFIB(K)_1_Kpn3 | 0/0 | 100 | 91.1 | JN233704 | IncFIB(K)_1_Kpn3_JN233704 |
| contig00055 | 16500 | 16938 | IncFIB(Mar)_1_pNDM-Mar | 0/0 | 100 | 100.0 | JN420336 | IncFIB(Mar)_1_pNDM-Mar_JN420336 |
| Field | Description |
|---|---|
| Contig | Contig name where the gene was found |
| Start | Start position of the gene within the contig |
| End | End position of the gene within the contig |
| Gene | Antibiotic resistance gene |
| Coverage | Proportion (%) of the gene covered |
| Identity | Proportion (%) of exact nucleotide matches |
| Accession | Accesion number of the antibiotic resistance gene |
| Product | Antibiotic resistance gene product |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00314 | 2555 | 3406 | + | entB | 99.3 | 82.6 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00030 | 10489 | 11559 | - | ompA | 100.0 | 83.2 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00118 | 344 | 1097 | - | yagV/ecpE | 99.7 | 84.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00118 | 1023 | 2666 | - | yagW/ecpD | 100.0 | 88.2 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00118 | 2656 | 5181 | - | yagX/ecpC | 100.0 | 86.7 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00118 | 5207 | 5875 | - | yagY/ecpB | 100.0 | 87.9 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00118 | 5937 | 6520 | - | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00118 | 6594 | 7174 | - | ykgK/ecpR | 98.3 | 86.9 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00048 | 6332 | 7384 | - | ompA | 100.0 | 85.3 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00759 | 122 | 1580 | - | yagW/ecpD | 88.8 | 89.4 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00514 | 1230 | 1813 | + | yagZ/ecpA | 99.3 | 89.6 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00514 | 575 | 1155 | + | ykgK/ecpR | 98.3 | 87.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00457 | 1427 | 2172 | + | entA | 99.2 | 80.2 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00457 | 566 | 1417 | + | entB | 99.2 | 82.2 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00532 | 162 | 933 | + | fepC | 94.6 | 80.6 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00008 | 7934 | 9955 | + | fyuA | 100.0 | 100.0 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00054 | 5154 | 11261 | - | irp2 | 100.0 | 99.8 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00026 | 10300 | 11370 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00134 | 10614 | 11367 | + | yagV/ecpE | 99.7 | 85.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 9045 | 10688 | + | yagW/ecpD | 100.0 | 88.9 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 6530 | 9055 | + | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 5836 | 6504 | + | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 5190 | 5773 | + | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00054 | 11452 | 12411 | - | ybtA | 100.0 | 99.9 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00008 | 6226 | 7803 | + | ybtE | 100.0 | 99.8 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00054 | 12578 | 14380 | + | ybtP | 100.0 | 99.7 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00054 | 14367 | 16169 | + | ybtQ | 100.0 | 99.9 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00054 | 17470 | 18774 | + | ybtS | 100.0 | 97.5 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00008 | 5419 | 6222 | + | ybtT | 100.0 | 99.8 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00008 | 4322 | 5422 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00054 | 16162 | 17442 | + | ybtX | 100.0 | 97.7 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00134 | 4535 | 5115 | + | ykgK/ecpR | 98.3 | 86.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00094 | 15312 | 16057 | - | entA | 99.2 | 80.3 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00094 | 16067 | 16918 | - | entB | 99.2 | 82.4 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00450 | 152 | 923 | + | fepC | 94.6 | 80.8 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 133171 | 135192 | + | fyuA | 100.0 | 100.0 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 120071 | 129562 | + | irp1 | 100.0 | 99.8 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 113876 | 119983 | + | irp2 | 100.0 | 99.7 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00015 | 10409 | 11479 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00145 | 10635 | 11388 | + | yagV/ecpE | 99.7 | 85.5 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00145 | 9066 | 10709 | + | yagW/ecpD | 100.0 | 88.4 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00145 | 6551 | 9076 | + | yagX/ecpC | 100.0 | 87.4 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00145 | 5857 | 6525 | + | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00145 | 5212 | 5795 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 112726 | 113685 | + | ybtA | 100.0 | 99.7 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 131463 | 133040 | + | ybtE | 100.0 | 99.7 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 110757 | 112559 | - | ybtP | 100.0 | 99.5 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 108968 | 110770 | - | ybtQ | 100.0 | 99.9 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 106363 | 107667 | - | ybtS | 100.0 | 97.6 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 130656 | 131459 | + | ybtT | 100.0 | 99.6 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 129559 | 130659 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 107695 | 108975 | - | ybtX | 100.0 | 97.6 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00145 | 4557 | 5137 | + | ykgK/ecpR | 98.3 | 86.4 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00152 | 4869 | 5614 | + | entA | 99.2 | 80.4 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00152 | 4008 | 4859 | + | entB | 99.2 | 81.8 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00343 | 99 | 870 | + | fepC | 94.6 | 81.0 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 194093 | 196114 | + | fyuA | 100.0 | 100.0 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 180993 | 190484 | + | irp1 | 100.0 | 99.9 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 174798 | 180905 | + | irp2 | 100.0 | 99.8 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00083 | 10370 | 11440 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00141 | 10752 | 11505 | + | yagV/ecpE | 99.7 | 85.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 9183 | 10826 | + | yagW/ecpD | 100.0 | 88.8 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 6668 | 9193 | + | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 5974 | 6642 | + | yagY/ecpB | 100.0 | 88.2 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 5328 | 5911 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00001 | 173648 | 174607 | + | ybtA | 100.0 | 99.8 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 192385 | 193962 | + | ybtE | 100.0 | 99.8 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 171679 | 173481 | - | ybtP | 100.0 | 99.7 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 169890 | 171692 | - | ybtQ | 100.0 | 99.9 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 167285 | 168589 | - | ybtS | 100.0 | 97.6 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 191578 | 192381 | + | ybtT | 100.0 | 99.8 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 190481 | 191581 | + | ybtU | 100.0 | 99.7 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00001 | 168617 | 169897 | - | ybtX | 100.0 | 97.7 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00141 | 4673 | 5253 | + | ykgK/ecpR | 98.3 | 86.2 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00076 | 15253 | 15998 | - | entA | 99.2 | 80.3 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00076 | 16008 | 16859 | - | entB | 99.2 | 82.4 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00420 | 117 | 888 | + | fepC | 94.6 | 80.8 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 33135 | 35156 | + | fyuA | 100.0 | 99.8 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 20035 | 29526 | + | irp1 | 100.0 | 99.8 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 13840 | 19947 | + | irp2 | 100.0 | 99.8 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00006 | 18114 | 19184 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00151 | 10593 | 11346 | + | yagV/ecpE | 99.7 | 85.5 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00151 | 9024 | 10667 | + | yagW/ecpD | 100.0 | 88.4 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00151 | 6509 | 9034 | + | yagX/ecpC | 100.0 | 87.4 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00151 | 5815 | 6483 | + | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00151 | 5170 | 5753 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00012 | 12690 | 13649 | + | ybtA | 100.0 | 99.8 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 31427 | 33004 | + | ybtE | 100.0 | 99.8 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 10721 | 12523 | - | ybtP | 100.0 | 99.8 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 8932 | 10734 | - | ybtQ | 100.0 | 99.9 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 6327 | 7631 | - | ybtS | 100.0 | 99.8 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 30620 | 31423 | + | ybtT | 100.0 | 99.6 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 29523 | 30623 | + | ybtU | 100.0 | 100.0 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00012 | 7659 | 8939 | - | ybtX | 100.0 | 99.9 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00151 | 4515 | 5095 | + | ykgK/ecpR | 98.3 | 86.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00154 | 5020 | 5765 | + | entA | 99.2 | 80.7 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00154 | 4159 | 5010 | + | entB | 99.2 | 82.4 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00290 | 131 | 902 | + | fepC | 94.6 | 80.8 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00001 | 18017 | 19087 | + | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00082 | 530 | 1283 | - | yagV/ecpE | 99.7 | 85.2 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00082 | 1209 | 2852 | - | yagW/ecpD | 100.0 | 88.6 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00082 | 2842 | 5367 | - | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00082 | 5393 | 6061 | - | yagY/ecpB | 100.0 | 87.7 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00082 | 6125 | 6708 | - | yagZ/ecpA | 99.3 | 90.4 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00082 | 6783 | 7363 | - | ykgK/ecpR | 98.3 | 86.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00182 | 485 | 599 | + | astA | 98.3 | 91.3 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig00009 | 6207 | 7040 | - | csgG | 100.0 | 81.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00002 | 15401 | 15937 | - | lpfA | 100.0 | 89.2 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00002 | 14617 | 15315 | - | lpfB | 100.0 | 89.1 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00002 | 12066 | 14594 | - | lpfC | 100.0 | 90.1 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00002 | 10439 | 10966 | - | lpfE | 100.0 | 83.3 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00006 | 36444 | 37489 | + | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00194 | 485 | 599 | + | astA | 98.3 | 91.3 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig00006 | 6197 | 7030 | - | csgG | 100.0 | 81.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00012 | 15989 | 16525 | - | lpfA | 100.0 | 89.2 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00012 | 15205 | 15903 | - | lpfB | 100.0 | 89.1 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00012 | 12654 | 15182 | - | lpfC | 100.0 | 90.1 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00012 | 11027 | 11554 | - | lpfE | 100.0 | 83.3 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00022 | 36444 | 37489 | + | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00967 | 91 | 279 | + | afaF-VII | 100.0 | 97.9 | AAK16195 | (afaF-VII) AfaF-VII [Afimbrial adhesin AfaE-VIII (AI015)] [Escherichia coli str. 239 KH 89] |
| contig00954 | 1 | 1319 | + | aslA | 92.3 | 93.4 | AAG10151 | (aslA) putative arylsulfatase [AslA (VF0238)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00860 | 511 | 627 | + | astA | 100.0 | 95.7 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig02084 | 739 | 855 | + | astA | 100.0 | 100.0 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig02186 | 606 | 1061 | - | csgB | 99.8 | 83.8 | NP_460114 | (csgB) minor curlin subunit precursor curli nucleator protein CsgB [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig01497 | 622 | 1272 | + | csgD | 100.0 | 81.1 | NP_460113 | (csgD) DNA-binding transcriptional regulator CsgD [curli fibers/thin aggregative fimbriae (AGF) (AI094)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig01306 | 153 | 986 | + | csgG | 100.0 | 83.5 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00099 | 7122 | 7868 | - | entA | 100.0 | 95.7 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00099 | 7868 | 8725 | - | entB | 100.0 | 98.1 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00784 | 1644 | 2495 | + | entB | 99.2 | 82.3 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00099 | 10359 | 11546 | - | entC | 100.0 | 97.9 | NP_752611 | (entC) isochorismate synthase 1 [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00651 | 105 | 875 | - | entD | 100.0 | 95.2 | NP_752599 | (entD) phosphopantetheinyl transferase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00099 | 8739 | 10349 | - | entE | 100.0 | 95.5 | NP_752612 | (entE) 23-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00751 | 33 | 3886 | + | entF | 99.3 | 95.7 | NP_752604 | (entF) enterobactin synthase multienzyme complex component ATP-dependent [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig01590 | 528 | 1778 | - | entS | 100.0 | 95.4 | NP_752609 | (entS) enterobactin exporter iron-regulated [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig01178 | 3 | 1919 | + | espL4 | 87.7 | 97.4 | NP_290644 | (espL4) Type III secretion system effector EspL4 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig01115 | 1439 | 2493 | + | espR1 | 83.7 | 94.0 | NP_287686 | (espR1) Type III secretion system effector espR1 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00063 | 8562 | 9854 | - | espX5 | 100.0 | 97.1 | NP_290699 | (espX5) Type III secretion system effector EspX5 [LEE encoded T3SS (SS020)] [Escherichia coli O157:H7 str. EDL933] |
| contig00651 | 900 | 3140 | - | fepA | 100.0 | 96.7 | NP_752600 | (fepA) ferrienterobactin outer membrane transporter [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00804 | 1046 | 1861 | - | fepC | 100.0 | 97.3 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig01717 | 160 | 931 | + | fepC | 94.6 | 80.2 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00804 | 2847 | 3863 | - | fepD | 100.0 | 96.1 | NP_752608 | (fepD) ferrienterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00804 | 1858 | 2850 | - | fepG | 100.0 | 94.1 | NP_752607 | (fepG) iron-enterobactin ABC transporter permease [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00651 | 3383 | 4585 | + | fes | 100.0 | 96.7 | NP_752602 | (fes) enterobactin/ferric enterobactin esterase [enterobactin (IA019)] [Escherichia coli CFT073] |
| contig02001 | 423 | 1034 | - | fimA | 100.0 | 88.6 | NP_757241 | (fimA) Type-1 fimbrial protein A chain precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig02510 | 170 | 772 | + | fimB | 100.0 | 97.8 | NP_757239 | (fimB) Type 1 fimbriae Regulatory protein fimB [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig02492 | 250 | 753 | + | fimG | 100.0 | 98.4 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig02179 | 443 | 982 | + | fimI | 100.0 | 98.5 | NP_757242 | (fimI) Fimbrin-like protein fimI precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00305 | 1589 | 2419 | + | gspC | 100.0 | 94.7 | YP_404599 | (gspC) general secretion pathway protein C [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00305 | 2659 | 4509 | + | gspD | 100.0 | 96.1 | YP_404600 | (gspD) general secretion pathway protein D [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00305 | 4509 | 6002 | + | gspE | 100.0 | 97.0 | YP_404601 | (gspE) general secretion pathway protein E [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00305 | 6002 | 7201 | + | gspF | 100.0 | 96.0 | YP_404602 | (gspF) general secretion pathway protein F [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00305 | 7242 | 7697 | + | gspG | 100.0 | 95.0 | YP_404603 | (gspG) general secretion pathway protein G [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig01367 | 1 | 520 | + | gspH | 97.9 | 95.6 | YP_404604 | (gspH) general secretion pathway protein H [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig01367 | 517 | 888 | + | gspI | 100.0 | 95.2 | YP_404605 | (gspI) general secretion pathway protein I [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig01367 | 921 | 1490 | + | gspJ | 100.0 | 96.7 | YP_404606 | (gspJ) general secretion pathway protein J [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig02600 | 1 | 726 | + | gspL | 84.3 | 97.1 | YP_404608 | (gspL) general secretion pathway protein L [T2SS (VF0333)] [Shigella dysenteriae Sd197] |
| contig00194 | 1244 | 3031 | + | iucA | 100.0 | 94.2 | NP_755502 | (iucA) aerobactin siderophore biosynthesis protein IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00194 | 3032 | 3979 | + | iucB | 100.0 | 95.6 | NP_755501 | (iucB) aerobactin siderophore biosynthesis protein IucB [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00194 | 3979 | 5721 | + | iucC | 100.0 | 96.0 | NP_755500 | (iucC) aerobactin siderophore biosynthesis protein IucC [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00194 | 5718 | 7039 | + | iucD | 98.8 | 96.3 | NP_755499 | (iucD) L-lysine 6-monooxygenase IucD [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00194 | 6977 | 9278 | + | iutA | 100.0 | 88.4 | NP_755498 | (iutA) ferric aerobactin receptor precusor IutA [Aerobactin (VF0229)] [Escherichia coli CFT073] |
| contig00022 | 17849 | 18901 | - | ompA | 100.0 | 85.5 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00281 | 4117 | 5157 | - | ompA | 100.0 | 98.1 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00111 | 10939 | 11692 | + | yagV/ecpE | 99.7 | 84.2 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00861 | 2512 | 3265 | + | yagV/ecpE | 99.7 | 97.0 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00111 | 9370 | 11013 | + | yagW/ecpD | 100.0 | 88.6 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00861 | 945 | 2588 | + | yagW/ecpD | 100.0 | 99.0 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00111 | 6855 | 9380 | + | yagX/ecpC | 100.0 | 87.5 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00111 | 6161 | 6829 | + | yagY/ecpB | 100.0 | 86.1 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00625 | 3110 | 3778 | + | yagY/ecpB | 100.0 | 98.1 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00111 | 5514 | 6097 | + | yagZ/ecpA | 99.3 | 89.0 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00625 | 2465 | 3052 | + | yagZ/ecpA | 100.0 | 99.2 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig01261 | 647 | 2224 | + | ybtE | 100.0 | 99.9 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig02277 | 148 | 1036 | + | ybtU | 80.7 | 100.0 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig01339 | 1018 | 2279 | - | ybtX | 98.5 | 99.5 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00111 | 4859 | 5439 | + | ykgK/ecpR | 98.3 | 87.3 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00625 | 1800 | 2390 | + | ykgK/ecpR | 100.0 | 97.0 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00091 | 15257 | 16002 | - | entA | 99.2 | 80.3 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00091 | 16012 | 16863 | - | entB | 99.2 | 82.4 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00417 | 127 | 898 | + | fepC | 94.6 | 80.8 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00003 | 18123 | 19193 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00147 | 10546 | 11299 | + | yagV/ecpE | 99.7 | 85.5 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00147 | 8977 | 10620 | + | yagW/ecpD | 100.0 | 88.4 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00147 | 6462 | 8987 | + | yagX/ecpC | 100.0 | 87.4 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00147 | 5768 | 6436 | + | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00147 | 5123 | 5706 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00147 | 4468 | 5048 | + | ykgK/ecpR | 98.3 | 86.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00140 | 4911 | 5656 | + | entA | 99.3 | 80.7 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00140 | 4050 | 4901 | + | entB | 99.2 | 82.2 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00308 | 135 | 906 | + | fepC | 94.6 | 81.0 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00012 | 18115 | 19191 | - | ompA | 100.0 | 83.3 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00131 | 10824 | 11577 | + | yagV/ecpE | 99.7 | 85.2 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00131 | 9255 | 10898 | + | yagW/ecpD | 100.0 | 88.9 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00131 | 6740 | 9265 | + | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00131 | 6046 | 6714 | + | yagY/ecpB | 100.0 | 87.4 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00131 | 5400 | 5983 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00131 | 4745 | 5325 | + | ykgK/ecpR | 98.3 | 86.8 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00149 | 4828 | 5573 | + | entA | 99.2 | 80.4 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00149 | 3967 | 4818 | + | entB | 99.2 | 81.8 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00490 | 135 | 906 | + | fepC | 94.6 | 81.0 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00004 | 28923 | 30944 | + | fyuA | 100.0 | 99.9 | NP_405467 | (fyuA) pesticin/yersiniabactin receptor protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 15823 | 25314 | + | irp1 | 100.0 | 99.8 | NP_405471 | (irp1) yersiniabactin biosynthetic protein Irp1 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 9628 | 15735 | + | irp2 | 100.0 | 99.7 | NP_405472 | (irp2) yersiniabactin biosynthetic protein Irp2 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00062 | 10303 | 11373 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00136 | 10792 | 11545 | + | yagV/ecpE | 99.7 | 85.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00136 | 9223 | 10866 | + | yagW/ecpD | 100.0 | 88.8 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00136 | 6708 | 9233 | + | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00136 | 6014 | 6682 | + | yagY/ecpB | 100.0 | 88.2 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00136 | 5368 | 5951 | + | yagZ/ecpA | 99.3 | 89.9 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00004 | 8478 | 9437 | + | ybtA | 100.0 | 99.7 | NP_405473 | (ybtA) transcriptional regulator YbtA [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 27215 | 28792 | + | ybtE | 100.0 | 99.7 | NP_405468 | (ybtE) yersiniabactin siderophore biosynthetic protein [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 6509 | 8311 | - | ybtP | 100.0 | 99.6 | NP_405474 | (ybtP) lipoprotein inner membrane ABC-transporter [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 4720 | 6522 | - | ybtQ | 100.0 | 99.9 | NP_405475 | (ybtQ) inner membrane ABC-transporter YbtQ [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 2115 | 3419 | - | ybtS | 100.0 | 97.6 | NP_405477 | (ybtS) salicylate synthase Irp9 [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 26408 | 27211 | + | ybtT | 100.0 | 99.6 | NP_405469 | (ybtT) yersiniabactin biosynthetic protein YbtT [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 25311 | 26411 | + | ybtU | 100.0 | 99.6 | NP_405470 | (ybtU) yersiniabactin biosynthetic protein YbtU [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00004 | 3447 | 4727 | - | ybtX | 100.0 | 97.6 | NP_405476 | (ybtX) putative signal transducer [Yersiniabactin (VF0136)] [Yersinia pestis CO92] |
| contig00136 | 4713 | 5293 | + | ykgK/ecpR | 98.3 | 86.2 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00252 | 1026 | 1877 | - | entB | 99.3 | 82.6 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00039 | 10489 | 11559 | - | ompA | 100.0 | 83.2 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00124 | 360 | 1113 | - | yagV/ecpE | 99.7 | 84.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 1039 | 2682 | - | yagW/ecpD | 100.0 | 88.2 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 2672 | 5197 | - | yagX/ecpC | 100.0 | 86.7 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 5223 | 5891 | - | yagY/ecpB | 100.0 | 87.9 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 5953 | 6536 | - | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 6610 | 7190 | - | ykgK/ecpR | 98.3 | 86.9 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00121 | 485 | 599 | + | astA | 98.3 | 91.3 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig00046 | 2195 | 3028 | - | csgG | 100.0 | 81.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00011 | 15401 | 15937 | - | lpfA | 100.0 | 89.2 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00011 | 14617 | 15315 | - | lpfB | 100.0 | 89.1 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00011 | 12066 | 14594 | - | lpfC | 100.0 | 90.1 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00011 | 10439 | 10966 | - | lpfE | 100.0 | 83.3 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00060 | 11531 | 12576 | + | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00178 | 5342 | 6087 | - | entA | 99.6 | 80.1 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00178 | 6097 | 6948 | - | entB | 99.2 | 82.3 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00382 | 254 | 1025 | + | fepC | 94.6 | 80.2 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00022 | 17942 | 19012 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00124 | 535 | 1288 | - | yagV/ecpE | 99.7 | 84.2 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 1214 | 2857 | - | yagW/ecpD | 100.0 | 88.3 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 2847 | 5372 | - | yagX/ecpC | 100.0 | 86.8 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 5398 | 6066 | - | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 6128 | 6711 | - | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00124 | 6785 | 7365 | - | ykgK/ecpR | 98.3 | 86.9 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig01202 | 485 | 599 | + | astA | 98.3 | 91.3 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig00023 | 6152 | 6985 | - | csgG | 100.0 | 81.7 | NP_460110 | (csgG) curli production assembly/transport protein CsgG [Agf (VF0103)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00996 | 578 | 1429 | + | entB | 99.2 | 82.3 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig01045 | 208 | 979 | + | fepC | 94.6 | 80.2 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00090 | 15401 | 15937 | - | lpfA | 100.0 | 89.2 | NP_462541 | (lpfA) long polar fimbria protein LpfA [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00090 | 14617 | 15315 | - | lpfB | 100.0 | 89.1 | NP_462540 | (lpfB) long polar fimbrial chaperone protein LpfB [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00090 | 12066 | 14594 | - | lpfC | 100.0 | 90.1 | NP_462539 | (lpfC) long polar fimbrial usher protein LpfC [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00090 | 10439 | 10966 | - | lpfE | 100.0 | 83.3 | NP_462537 | (lpfE) long polar fimbrial minor subunit LpfE adhesin [Lpf (VF0105)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] |
| contig00126 | 1073 | 2118 | + | ompA | 99.0 | 84.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00178 | 8589 | 9659 | - | ompA | 100.0 | 83.8 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00461 | 360 | 1113 | - | yagV/ecpE | 99.7 | 84.2 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00461 | 1039 | 2682 | - | yagW/ecpD | 100.0 | 88.3 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00461 | 2672 | 5197 | - | yagX/ecpC | 100.0 | 86.8 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00461 | 5223 | 5891 | - | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00461 | 5953 | 6536 | - | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00624 | 4000 | 4580 | + | ykgK/ecpR | 98.3 | 86.9 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00395 | 1851 | 2702 | + | entB | 99.2 | 82.0 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00512 | 159 | 930 | + | fepC | 94.6 | 80.7 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00014 | 18104 | 19174 | - | ompA | 100.0 | 83.7 | AAF37887 | (ompA) outer membrane protein A [OmpA (VF0236)] [Escherichia coli O18:K1:H7 str. RS218] |
| contig00134 | 10674 | 11427 | + | yagV/ecpE | 99.7 | 85.3 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 9105 | 10748 | + | yagW/ecpD | 100.0 | 88.9 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 6590 | 9115 | + | yagX/ecpC | 100.0 | 87.3 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 5896 | 6564 | + | yagY/ecpB | 100.0 | 87.6 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 5250 | 5833 | + | yagZ/ecpA | 99.3 | 90.1 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00134 | 4595 | 5175 | + | ykgK/ecpR | 98.3 | 86.6 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Contig | Start | End | Strand | Gene | Coverage | Identity | Accession | Product |
|---|---|---|---|---|---|---|---|---|
| contig00045 | 9390 | 9504 | + | astA | 98.3 | 88.7 | BAA94855 | (astA) heat-stable enterotoxin 1 [EAST1 (VF0216)] [Escherichia coli O44:H18 042] |
| contig00281 | 4991 | 5736 | + | entA | 99.6 | 80.3 | NP_752614 | (entA) 23-dihydro-23-dihydroxybenzoate dehydrogenase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00281 | 4130 | 4981 | + | entB | 99.2 | 81.6 | NP_752613 | (entB) isochorismatase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00689 | 79 | 850 | + | fepC | 94.6 | 80.8 | NP_752606 | (fepC) ferrienterobactin ABC transporter ATPase [Enterobactin (VF0228)] [Escherichia coli CFT073] |
| contig00922 | 174 | 615 | + | fimG | 87.7 | 98.4 | NP_757247 | (fimG) FimG protein precursor [Type 1 fimbriae (VF0221)] [Escherichia coli CFT073] |
| contig00141 | 10110 | 10863 | + | yagV/ecpE | 99.7 | 85.4 | NP_286006 | (yagV/ecpE) E. coli common pilus chaperone EcpE [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 8541 | 10184 | + | yagW/ecpD | 100.0 | 88.8 | NP_286007 | (yagW/ecpD) polymerized tip adhesin of ECP fibers [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 6026 | 8551 | + | yagX/ecpC | 100.0 | 87.5 | NP_286008 | (yagX/ecpC) E. coli common pilus usher EcpC [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 5332 | 6000 | + | yagY/ecpB | 100.0 | 86.2 | NP_286009 | (yagY/ecpB) E. coli common pilus chaperone EcpB [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 4687 | 5270 | + | yagZ/ecpA | 99.3 | 89.6 | NP_286010 | (yagZ/ecpA) E. coli common pilus structural subunit EcpA [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| contig00141 | 4032 | 4612 | + | ykgK/ecpR | 98.3 | 87.4 | NP_286011 | (ykgK/ecpR) regulator protein EcpR [ECP (VF0404)] [Escherichia coli O157:H7 str. EDL933] |
| Symbol | Meaning |
|---|---|
| ~ | novel full length allele similar to match |
| ? | partial match to known allele |
| - | allele missing |
| Scheme | ST | 1 | 2 | 3 | 4 | 5 | 6 | 7 | |
|---|---|---|---|---|---|---|---|---|---|
| ID014CT | kpneumoniae | 2478 | gapA(18) | infB(15) | mdh(26) | pgi(61) | phoE(32) | rpoB(20) | tonB(312) |
| ID025 | kpneumoniae | - | gapA(16) | infB(24) | mdh(21) | pgi(27) | phoE(47) | rpoB(22) | tonB(630?) |
| ID035 | kpneumoniae | 14 | gapA(1) | infB(6) | mdh(1) | pgi(1) | phoE(1) | rpoB(1) | tonB(1) |
| ID037 | kpneumoniae | 607 | gapA(2) | infB(1) | mdh(2) | pgi(80) | phoE(10) | rpoB(1) | tonB(155) |
| ID06CT | kpneumoniae | 17 | gapA(2) | infB(1) | mdh(1) | pgi(1) | phoE(4) | rpoB(4) | tonB(4) |
| ID08CT | kpneumoniae | 307 | gapA(4) | infB(1) | mdh(2) | pgi(52) | phoE(1) | rpoB(1) | tonB(7) |
| ID125 | kpneumoniae | 20 | gapA(2) | infB(3) | mdh(1) | pgi(1) | phoE(4) | rpoB(4) | tonB(4) |
| ID125II | saureus | 8 | arcC(3) | aroE(3) | glpF(1) | gmk(1) | pta(4) | tpi(4) | yqiL(3) |
| ID135 | kpneumoniae | 495 | gapA(4) | infB(1) | mdh(1) | pgi(1) | phoE(9) | rpoB(1) | tonB(35) |
| ID149 | ecloacae | - | dnaA(~144) | fusA(106) | gyrB(~330) | leuS(237) | pyrG(~298) | rplB(12) | rpoB(148) |
| ID151 | - | - | |||||||
| ID152 | ecloacae | - | dnaA(~144) | fusA(106) | gyrB(~330) | leuS(237) | pyrG(~298) | rplB(12) | rpoB(148) |
| ID163I | ecoli | - | adk(10) | fumC(11) | gyrB(4) | icd(8) | mdh(8) | purA(~561) | recA(2) |
| ID187CT | kpneumoniae | 17 | gapA(2) | infB(1) | mdh(1) | pgi(1) | phoE(4) | rpoB(4) | tonB(4) |
| ID188 | kpneumoniae | 491 | gapA(51) | infB(1) | mdh(5) | pgi(1) | phoE(9) | rpoB(4) | tonB(13) |
| ID198 | kpneumoniae | 307 | gapA(4) | infB(1) | mdh(2) | pgi(52) | phoE(1) | rpoB(1) | tonB(7) |
| ID260 | kpneumoniae | 2478 | gapA(18) | infB(15) | mdh(26) | pgi(61) | phoE(32) | rpoB(20) | tonB(312) |
| ORTHO042EI | ecloacae | - | dnaA(~144) | fusA(106) | gyrB(~330) | leuS(237) | pyrG(~298) | rplB(12) | rpoB(148) |
| ORTHO053E | kpneumoniae | - | gapA(18) | infB(~15) | mdh(26) | pgi(16) | phoE(11) | rpoB(13) | tonB(~49) |
| ORTHO066E | kpneumoniae | - | gapA(18) | infB(~15) | mdh(26) | pgi(16) | phoE(11) | rpoB(13) | tonB(622?) |
| ORTHO067E | kpneumoniae | 290 | gapA(2) | infB(1) | mdh(1) | pgi(37) | phoE(10) | rpoB(1) | tonB(86) |
| ORTHO08HWII | kpneumoniae | - | gapA(16) | infB(18) | mdh(21) | pgi(27) | phoE(57) | rpoB(22) | tonB(570?) |
| Genes | Description | Number |
|---|---|---|
| Core genes | (99% <= strains <= 100%) | 0 |
| Soft core genes | (95% <= strains < 99%) | 0 |
| Shell genes | (15% <= strains < 95%) | 10239 |
| Cloud genes | (0% <= strains < 15%) | 20516 |
| Total genes | (0% <= strains <= 100%) | 30755 |
| Field | Description |
|---|---|
| Region | Numeric code given to insertion sequence (IS) |
| Orientation | The orientation of IS position: Either forward (F) or reverse (F) |
| X-cordinates | The left coordinate of the position |
| Y-coordinates | The right coordinate of the position |
| Gap | The distance between the x and y coordinates |
| CallType | Describes whether a position hit is novel (not in reference) or known (in the reference) |
| LeftGene | Locus tag ID of the gene closest to the left side of the IS position |
| LeftGeneDescription | Description of the gene feature from the left side of the IS position. By default this is the product position |
| RightGene | Locus tag ID of the gene closest to the right side of the IS position |
| RightGeneDescription | Description of the gene feature from the right side of the IS position. By default this is the product position |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 3207690 | 3207722 | 32 | novel* | AC565_15655 | alpha-ketoglutarate permease | AC565_15660 | hypothetical protein |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | F | 658027 | 658037 | -10 | novel | AC565_03205 | biofilm formation protein HmsH | AC565_03210 | LuxR family transcriptional regulator |
| region_2 | R | 4961056 | 4961066 | -10 | novel | AC565_24355 | transposase | AC565_24355 | transposase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 337664 | 337665 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_01640 | rhamnose:proton symporter |
| region_1 | R | -1 | 3838036 | 3838037 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_18780 | transposase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 3336381 | 3336388 | 7 | novel | AC565_16285 | cysteine desulfurase | AC565_16285 | cysteine desulfurase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 2181963 | 2181973 | -10 | novel | AC565_10445 | nucleoside permease | AC565_10445 | nucleoside permease |
| region_2 | R | 3007014 | 3007020 | 6 | novel | AC565_14605 | membrane protein | AC565_14605 | membrane protein |
| region_3 | R | 3672558 | 3672567 | -9 | novel | AC565_18075 | LuxR family transcriptional regulator | AC565_18080 | amino acid ABC transporter ATP-binding protein |
| region_4 | F | 3687366 | 3687379 | 13 | novel | AC565_18160 | porin | AC565_18160 | porin |
| region_5 | F | 3752419 | 3752429 | -10 | novel | AC565_18405 | molybdopterin-guanine dinucleotide biosynthesis protein MobB | AC565_18405 | molybdopterin-guanine dinucleotide biosynthesis protein MobB |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | F | 241180 | 241684 | 504 | novel* | AC565_01180 | transposase | AC565_01180 | transposase |
| region_2 | F | 2544586 | 2545029 | 443 | novel* | AC565_12285 | transposase | AC565_12285 | transposase |
| region_3 | F | 2832906 | 2833360 | 454 | novel* | AC565_13750 | transposase | AC565_13750 | transposase |
| region_4 | R | 3264949 | 3265407 | 458 | novel* | AC565_15950 | transposase | AC565_15950 | transposase |
| region_5 | F | 3811651 | 3812105 | 454 | novel* | AC565_18675 | transposase | AC565_18675 | transposase |
| region_6 | F | 4995037 | 4995498 | 461 | novel* | AC565_24565 | transposase | AC565_24565 | transposase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 1330468 | 1330469 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_06435 | transposase |
| region_2 | R | -1 | 3838397 | 3838398 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_18780 | transposase |
| region_3 | R | -1 | 4777436 | 4777437 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_23395 | ferrous iron transporter B |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 1330468 | 1330469 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_06435 | transposase |
| region_2 | R | -1 | 3838397 | 3838398 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_18780 | transposase |
| region_3 | R | -1 | 4777443 | 4777444 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_23395 | ferrous iron transporter B |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 4088547 | 4088627 | 80 | novel* | AC565_19875 | hypothetical protein | AC565_19875 | hypothetical protein |
| region_2 | R | 5429934 | 5429947 | 13 | novel | AC565_26755 | hypothetical protein | AC565_26760 | cellulose biosynthesis protein BcsE |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | FALSE | 2828229 | 2828230 | 1 | novel | AC565_13710 | hypothetical protein | AC565_13715 | hypothetical protein |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | 3207690 | 3207722 | 32 | novel* | AC565_15655 | alpha-ketoglutarate permease | AC565_15660 | hypothetical protein |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 1330435 | 1330436 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_06435 | transposase |
| region_2 | R | -1 | 3838365 | 3838366 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_18780 | transposase |
| region_3 | R | -1 | 4777431 | 4777432 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_23395 | ferrous iron transporter B |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | F | 2503768 | 2503776 | -8 | novel | AC565_12130 | aldo/keto reductase | AC565_12130 | aldo/keto reductase |
| region_2 | R | 2568682 | 2568686 | -4 | novel | AC565_12405 | methionine-binding protein | AC565_12405 | methionine-binding protein |
| region_3 | R | 3211612 | 3211679 | 67 | novel* | AC565_15660 | hypothetical protein | AC565_15670 | integrase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | F | 2503768 | 2503776 | -8 | novel | AC565_12130 | aldo/keto reductase | AC565_12130 | aldo/keto reductase |
| region_2 | R | 2568682 | 2568686 | -4 | novel | AC565_12405 | methionine-binding protein | AC565_12405 | methionine-binding protein |
| region_3 | R | 3211612 | 3211673 | 61 | novel* | AC565_15660 | hypothetical protein | AC565_15670 | integrase |
| Region | Orientation | X-coordinates | Y-coordinates | Gap | CallType | LeftGene | LeftGeneDescription | RightGene | RightGeneDescription |
|---|---|---|---|---|---|---|---|---|---|
| region_1 | R | -1 | 4777566 | 4777567 | novel | AC565_27010 | mannosyl-glycoprotein endo-beta-N-acetylglucosamidase | AC565_23395 | ferrous iron transporter B |
If you have used rMAP, please cite:
Sserwadda, I., & Mboowa, G. (2021). rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data. Microbial genomics, 7(6), 10.1099/mgen.0.000583. https://doi.org/10.1099/mgen.0.000583
The philosophy of rMAP was built on the foundation of already pre-existing tools. As a token of gratitude to the authors of those numerous tools, please also cite: